Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,261,554 – 11,261,674 |
Length | 120 |
Max. P | 0.593301 |
Location | 11,261,554 – 11,261,674 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.94 |
Mean single sequence MFE | -39.59 |
Consensus MFE | -24.23 |
Energy contribution | -25.95 |
Covariance contribution | 1.73 |
Combinations/Pair | 1.23 |
Mean z-score | -1.73 |
Structure conservation index | 0.61 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593301 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11261554 120 + 22224390 CCCAGACCAUUAUUGCCCAAUGUCAGGAGAUUAACCAUGCUGAAUCCAAUCACCAUGGCGGCGGACACAAAAUGGGCCAGGGUAAUAAUGGUAUAGCGAUCACGAAAAAAUCUGGUCAAA .....(((((((((((((................(((((.(((......))).))))).(((...((.....)).))).))))))))))))).....(((((.((.....)))))))... ( -37.20) >DroVir_CAF1 2731 120 + 1 CCCAGGCCGCUGCCGCCGACGGUCAGCAGAUCGAAGAUGCUGAAGCCGAUCACCAUGCUGGCGGACACAAAGUGGGCCAGUGUGAUGAUCGCAUAGCGUUGCCGAAAGAAGUGGGUUAGC ((((....(((((((....))).))))...(((..(((((((..((.(((((.(((((((((..((.....))..))))))))).))))))).)))))))..)))......))))..... ( -50.10) >DroSec_CAF1 4354 120 + 1 CCCAGACCAUUAUUGCCCAGUGUCAGAAGAUUAACCAUGCUGAAUCCAAUCACCAUGGCGGCGGACACGAAAUGGGCCAGGGUGAUAAUGGUAUAGCGAUCCCGAAAAAAUCUGGUCAAA .((((((((((((..(((.(((((....(.....(((((.(((......))).)))))...).)))))(........).)))..))))))))....((....)).......))))..... ( -37.30) >DroEre_CAF1 4491 120 + 1 CCCAGCCCAUUAUUGCCCAUCGCGAGGAGAUUGACCAUGCUGAAUCCAAUCACCAUGGCGGCGGAAACGAAAUGGGCCAGGGUGAUAAUGGUGUAGCGCUCCCGGAAAAAUCUGGCCAAA ....(((((((((..(((.((((.(((.(((((.............))))).)).).))))((....))..........)))..))))))).)).......(((((....)))))..... ( -39.22) >DroYak_CAF1 3594 120 + 1 CCCAGACCAUUAUUGCCCAGCGUGAGGAGAUUCACCAUGCUGAAUCCAAUCACCAUGGCGGCGGACACGAAAUGAGCCAGUGUGAUAACAGUAUAGCGUUCCCGGAAAAAUCUGGCCAAA .(((((...........(((((((..(.....)..)))))))..(((.(((((..((((..((....))......))))..)))))(((........)))...)))....)))))..... ( -32.60) >DroAna_CAF1 3840 120 + 1 CCCAGGCCGAUCCCGCCCACUGUCAGGAGGUUCACCAUGCUGAAGCCAAUCACCAUGGCGGCGGAGACGAAGUGGGCCAGGGUUAUGAUGGCAUAGCGCUGCCGAAAUGAUUUAAUCAAG (((.((((.((((((((.....((((.(((....)).).)))).((((.......))))))))).)).....).)))).)))((((..(((((......)))))..)))).......... ( -41.10) >consensus CCCAGACCAUUAUUGCCCACUGUCAGGAGAUUAACCAUGCUGAAUCCAAUCACCAUGGCGGCGGACACGAAAUGGGCCAGGGUGAUAAUGGUAUAGCGAUCCCGAAAAAAUCUGGUCAAA .(((((((((((((((((................(((((.(((......))).))))).(((.............))).)))))))))))))....((....)).......))))..... (-24.23 = -25.95 + 1.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:07 2006