Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,256,596 – 11,256,693 |
Length | 97 |
Max. P | 0.585431 |
Location | 11,256,596 – 11,256,693 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 82.22 |
Mean single sequence MFE | -22.12 |
Consensus MFE | -13.16 |
Energy contribution | -13.60 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -1.90 |
Structure conservation index | 0.59 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585431 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11256596 97 - 22224390 UCCUUUUCAGUGCCUUUGAGAAGACAUCUGGAUUUUCUA------------CGAAAUUAUUAUUAUUAACCUGAUCAACCGACAGAACUUCCUUCUUAUCGAGCACCUU .........(((((..(((((((...(((((.....)))------------.))................(((.((....)))))......)))))))..).))))... ( -17.00) >DroSec_CAF1 15966 91 - 1 UUCUUUUCGGUGCCUUUGAGAAGACAUCCGGAUUUUCCA------------CGAAAUU------AUUAACCUGAUCAACCGACAGAACCUCCUUCUUAUCGAGCACUUU ........((((((..(((((((......((.....)).------------.......------......(((.((....)))))......)))))))..).))))).. ( -18.90) >DroSim_CAF1 17066 91 - 1 UUCUUUUCGGUGCCUUUGAGAAGACAUCCGGAUUUUCCA------------CGAAAUU------AUUAACCUGAUCAACCGACAGAACCUCCUUCUUAUCGAGCACUUU ........((((((..(((((((......((.....)).------------.......------......(((.((....)))))......)))))))..).))))).. ( -18.90) >DroEre_CAF1 15758 103 - 1 UUUUGGUCAGUGGCUUUGAGAAGACAUCUGGAUUUUCCAUGGUGUCCAGUGCGAAGUU------AUUAACCUGAUCAAGCGACACAAUUUCCUUCUUAUCGAGCACCUU .(((((((((((((((((....(((((((((.....))).)))))).....)))))))------).....))))))))).............................. ( -26.50) >DroYak_CAF1 16397 103 - 1 UUUUUGUCAGUGCCUUUGAGAAGACAUCUGGAUUUUCCACGGUGUCCAGUGCGAAAUU------AUUAGCCUGGCCAACCGACAGAACCUCCUUCUUAUCCAGCACUUU ........(((((...(((((((.....(((.....)))((((..((((.((......------....))))))...))))..........)))))))....))))).. ( -29.30) >consensus UUCUUUUCAGUGCCUUUGAGAAGACAUCUGGAUUUUCCA____________CGAAAUU______AUUAACCUGAUCAACCGACAGAACCUCCUUCUUAUCGAGCACUUU .........((((...(((((((......((.....))................................(((.((....)))))......)))))))....))))... (-13.16 = -13.60 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:06 2006