Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,242,108 – 11,242,224 |
Length | 116 |
Max. P | 0.753456 |
Location | 11,242,108 – 11,242,224 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 86.46 |
Mean single sequence MFE | -25.14 |
Consensus MFE | -18.04 |
Energy contribution | -19.56 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.06 |
Mean z-score | -1.98 |
Structure conservation index | 0.72 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.753456 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11242108 116 + 22224390 UUAAUUACCAAUUCGUUUUUGCAUCUGAAUUGUUUAUACUUAAACUAUUUUGUGCAUUUUUUUUUGGAACCGCUCGAGUGCAUUUAUGGAAUCUAUGGUCUAAUAAAGGCACUUGA .......((((........(((((..((((.(((((....))))).)))).))))).......))))......((((((((.((((((((........))).))))).)))))))) ( -27.66) >DroSec_CAF1 1636 108 + 1 UUAAUUGCCAAUUCGUUUUAGCAUCUGAAUUGU-------UAAACUAUUUUGUGCAUUUG-UUUUGGAACCGCUCGAGUGCAUUUAUGGAAUCUAUGGUCUAAUAAAGGCACUUGA ((((.((((.......(((((((.......)))-------))))((((...(((((((((-...((....))..)))))))))..))))..................)))).)))) ( -24.40) >DroSim_CAF1 2222 108 + 1 UUAAUUGCCAAUUCGUUUUUGCAUCUGAAUUGU-------UAAACUAUUUUGUGCAUUUG-UUUUGGAACCGCUCGAGUGCAUUUAUGGAAUCUAUGGUCUAAUAAAGGCACUUGA .......((((..((....(((((..((((.(.-------....).)))).)))))..))-..))))......((((((((.((((((((........))).))))).)))))))) ( -24.70) >DroEre_CAF1 1684 113 + 1 UUAAUUACCAGUUCAUUUUUGCAUUUGAAUUGUUAAUACUUUAACUUUUUUGUGCAUUUG-UUUUUGACCUGCGCGAGUGCAUUUAUGGAAU--ACGGUCCAAUAAAGGCACUUGA ........(((.(((....(((((..(((..(((((....)))))..))).)))))....-....))).)))..(((((((.((((((((..--....))).))))).))))))). ( -28.60) >DroYak_CAF1 1666 113 + 1 UUAAUUACCAGUUUAUUUUUACAUCUCAAAUGUUUAUACUUUAACUAUUUUGUGCAUUUG-UUUUCGACCUGCUCGAGUGCAUUUAUGGAAU--ACAGUCCAAUAAAGGCACUUGA ..........................(((((((....................)))))))-............((((((((.((((((((..--....))).))))).)))))))) ( -20.35) >consensus UUAAUUACCAAUUCGUUUUUGCAUCUGAAUUGUU_AUACUUAAACUAUUUUGUGCAUUUG_UUUUGGAACCGCUCGAGUGCAUUUAUGGAAUCUAUGGUCUAAUAAAGGCACUUGA .......((((........(((((..((((.(((........))).)))).))))).......))))......((((((((.((((((((........))).))))).)))))))) (-18.04 = -19.56 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:56 2006