Locus 427

Sequence ID X_DroMel_CAF1
Location 1,247,752 – 1,247,846
Length 94
Max. P 0.913465
window659

overview

Window 9

Location 1,247,752 – 1,247,846
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 95.32
Mean single sequence MFE -40.00
Consensus MFE -34.30
Energy contribution -34.54
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.65
Structure conservation index 0.86
SVM decision value 1.09
SVM RNA-class probability 0.913465
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1247752 94 - 22224390
CGCGGAAUUGCUUGUGCUGCCGGCAGUGUGGUGGCUAUUGUUGAUGUUUCCGCGCUGAAGGCGUGGCAACUGCAGAGUGGGAGGGGUGCGGCGG
(((.(.(((.(((.(((((((..((((((((..((..........))..))))))))..)))(((....).))..)))).))).))).).))). ( -37.90)
>DroSec_CAF1 1999 94 - 1
CGCUGAGUUGCUUGUGCUGCCGGCAGUGUGGUGGCUAUUGUUGAUGUUUCCGCGCUGAAGGCGUGGCAGCUGCAGAGUGGGCGGGGUGCGGCGG
((((((((((((...((.(((..((((((((..((..........))..))))))))..))))))))))))((.......))......))))). ( -38.60)
>DroSim_CAF1 3223 94 - 1
CGCGGAGUUGCUUGUGCUGCCGGCAGUGUGGUGGCUAUUGUUGAUGUUUCCGCGCUGAAGGCGUGGCAGCUGCAGAGUGGGCGGGGUGCGGCGG
((((.(((((((...((.(((..((((((((..((..........))..))))))))..)))))))))))).).......((.....)).))). ( -37.90)
>DroEre_CAF1 3780 94 - 1
CGCGGAGUUGCUUGUGCUGCCGGCAGUGUGGUUGCUAUUGUUGUUGUUGCCGCGCUGAAGGCGUGGCAGCUGCAAAGUGGGCGGGGUGCGGCGG
(((((......)))))((((((.((.(.((.(..((.((((....((((((((((.....)))))))))).))))))..).)).).)))))))) ( -42.80)
>DroYak_CAF1 3339 94 - 1
CGCGGAGUUGCUUGUGCUGCCGGCAGUGUGGUUGCUAUUGUUGUUGUUGCCGCGCUGCAGGCGUGGCAGCUGCAAAGUGGGCGGGGUGCGGCGG
(((((......)))))((((((.((.(.((.(..((.((((....((((((((((.....)))))))))).))))))..).)).).)))))))) ( -42.80)
>consensus
CGCGGAGUUGCUUGUGCUGCCGGCAGUGUGGUGGCUAUUGUUGAUGUUUCCGCGCUGAAGGCGUGGCAGCUGCAGAGUGGGCGGGGUGCGGCGG
(((..(((((((...((.(((..((((((((..((..........))..))))))))..))))))))))))(((..(....)....))).))). (-34.30 = -34.54 +   0.24) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:21 2006