Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,247,752 – 1,247,846 |
Length | 94 |
Max. P | 0.913465 |
Location | 1,247,752 – 1,247,846 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 95.32 |
Mean single sequence MFE | -40.00 |
Consensus MFE | -34.30 |
Energy contribution | -34.54 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.65 |
Structure conservation index | 0.86 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1247752 94 - 22224390 CGCGGAAUUGCUUGUGCUGCCGGCAGUGUGGUGGCUAUUGUUGAUGUUUCCGCGCUGAAGGCGUGGCAACUGCAGAGUGGGAGGGGUGCGGCGG (((.(.(((.(((.(((((((..((((((((..((..........))..))))))))..)))(((....).))..)))).))).))).).))). ( -37.90) >DroSec_CAF1 1999 94 - 1 CGCUGAGUUGCUUGUGCUGCCGGCAGUGUGGUGGCUAUUGUUGAUGUUUCCGCGCUGAAGGCGUGGCAGCUGCAGAGUGGGCGGGGUGCGGCGG ((((((((((((...((.(((..((((((((..((..........))..))))))))..))))))))))))((.......))......))))). ( -38.60) >DroSim_CAF1 3223 94 - 1 CGCGGAGUUGCUUGUGCUGCCGGCAGUGUGGUGGCUAUUGUUGAUGUUUCCGCGCUGAAGGCGUGGCAGCUGCAGAGUGGGCGGGGUGCGGCGG ((((.(((((((...((.(((..((((((((..((..........))..))))))))..)))))))))))).).......((.....)).))). ( -37.90) >DroEre_CAF1 3780 94 - 1 CGCGGAGUUGCUUGUGCUGCCGGCAGUGUGGUUGCUAUUGUUGUUGUUGCCGCGCUGAAGGCGUGGCAGCUGCAAAGUGGGCGGGGUGCGGCGG (((((......)))))((((((.((.(.((.(..((.((((....((((((((((.....)))))))))).))))))..).)).).)))))))) ( -42.80) >DroYak_CAF1 3339 94 - 1 CGCGGAGUUGCUUGUGCUGCCGGCAGUGUGGUUGCUAUUGUUGUUGUUGCCGCGCUGCAGGCGUGGCAGCUGCAAAGUGGGCGGGGUGCGGCGG (((((......)))))((((((.((.(.((.(..((.((((....((((((((((.....)))))))))).))))))..).)).).)))))))) ( -42.80) >consensus CGCGGAGUUGCUUGUGCUGCCGGCAGUGUGGUGGCUAUUGUUGAUGUUUCCGCGCUGAAGGCGUGGCAGCUGCAGAGUGGGCGGGGUGCGGCGG (((..(((((((...((.(((..((((((((..((..........))..))))))))..))))))))))))(((..(....)....))).))). (-34.30 = -34.54 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:21 2006