Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,222,887 – 11,222,986 |
Length | 99 |
Max. P | 0.862593 |
Location | 11,222,887 – 11,222,986 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.09 |
Mean single sequence MFE | -22.34 |
Consensus MFE | -2.40 |
Energy contribution | -2.84 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.30 |
Mean z-score | -1.85 |
Structure conservation index | 0.11 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862593 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11222887 99 - 22224390 AAAUUAACUUUUCUUAAUAGGAAAGUAUUUAGUUAUAGUGAUAAUUAGGU------------U---CAUCUUAAGCUUGAGACU----AUAGGUA--AUAUGAGGGAAACCAACAAGUUG ......((((((((....))))))))..(((.(((((((.....((((((------------(---.......))))))).)))----)))).))--).....((....))......... ( -21.30) >DroSec_CAF1 10226 100 - 1 AAAUUGACUUUUCUUAAUAGGAAAGUAUUUACUUAUAGUGAUAG-UAGGU------------U---AAUCUUAAGCUUCAGGCU----AUAGGUAGAAUAUGAGGGAAACCAACAAGUUG ...(((((((((((....)))))))).((((((((((((((...-((((.------------.---...))))....))..)))----)))))))))......((....))..))).... ( -25.70) >DroSim_CAF1 1735 88 - 1 AAAUUAACUUUUCUUAAUAGGAAAGUAUUUAGUUAUAGUGAUAA-UAGGU---------------------------UCAGACU----AUAGGUAGAAUAUGAAAGAAACCAACAAGUUG ......((((((((....)))))))).((((.(((((((((...-.....---------------------------))..)))----)))).))))....................... ( -14.10) >DroEre_CAF1 10052 118 - 1 AAACUUACUUUUCCUAAUAAG-AAGCAUCUAGCUAUCAUGAUAA-AAGGUAUUGCUAGAUCUUAGGCUUCUUAAGCUUCAGACUACAUAUGUGUAGAUUAUGGGGGAAACCAACAAGUUG .(((((......((...((((-(((((((((((((((.......-..))))..))))))).....)))))))).........(((((....))))).....))((....))...))))). ( -30.50) >DroYak_CAF1 1896 115 - 1 AAAUGUACCUUUCUAAAAAAGUAAGCAUCUAGUUAACGUGAUAA-UAGUUAUUGCUAGAUCUUAGACUUCUUAAGCCUCAGACU----UUGGGUAGAACAUGGGAGAAACCAACAAGUUG ...(((....(((((..((((((((.(((((((((((.......-..))))..)))))))))))....(((........)))))----))...)))))..(((......))))))..... ( -20.10) >consensus AAAUUAACUUUUCUUAAUAGGAAAGUAUUUAGUUAUAGUGAUAA_UAGGU____________U___CAUCUUAAGCUUCAGACU____AUAGGUAGAAUAUGAGGGAAACCAACAAGUUG ........((((((((..........(((((.((((....)))).)))))...............................(((.......)))......))))))))............ ( -2.40 = -2.84 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:42 2006