Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,204,387 – 11,204,488 |
Length | 101 |
Max. P | 0.513226 |
Location | 11,204,387 – 11,204,488 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 73.06 |
Mean single sequence MFE | -20.32 |
Consensus MFE | -3.18 |
Energy contribution | -4.02 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.07 |
Mean z-score | -1.47 |
Structure conservation index | 0.16 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513226 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11204387 101 + 22224390 CCCGAAAAUCGAUAGCAACGAACGUUCGAUAACUGUUCGAUAAGCACG-CCAAAGCAAACUAUCGCUUUCAUUCCAGAAAGGUCGCGAAACCAAUAGGUUCU .((((....((((((...((((((((....))).)))))....((...-.....))...))))))(((((......))))).))).).((((....)))).. ( -20.60) >DroSec_CAF1 537 99 + 1 CCCGAAAAUCGAUAGCAACGAACGUGCGU--GCUGUUCGAUAAGCACG-CCAAGGCAAUUUAUCGCUUUCUUUCCAGAAAGUUCGCCAAGCCAAUAAGUUCU ..((.....))........(((((.((((--(((........))))))-))..(((........(((((((....))))))).......))).....)))). ( -27.36) >DroSim_CAF1 525 99 + 1 CCCGAAAAUCGAUAGCAACGAACGUGCGU--GCUGUUCGAUAAGCACG-CCAAGGCAAUUUAUCGCUUUCUUUCCAGAAAGUUCGCCAAGCCAAUAAGUUCU ..((.....))........(((((.((((--(((........))))))-))..(((........(((((((....))))))).......))).....)))). ( -27.36) >DroEre_CAF1 961 88 + 1 CCCGAAAAUCGAUAGAC-----------C--CCUUAUCGAACAACAAG-CCAAAUCAAAUUAUCGAUUUCUUGCCAGAAAGUUCGCGUAGACUAUACAUUUU ..((((..(((((((..-----------.--..)))))))....((((-..(((((........)))))))))........)))).(((.....)))..... ( -12.90) >DroYak_CAF1 593 89 + 1 CCCACAAACCGAUAGAG-----------C--CCUUAUCGAAAAUCAAAUCUAAAGCGAAUUAUCGAUUUCUUGCCAGAAAAUUCGUGUAGACUAAAAAUUUU .........((((((..-----------.--..)))))).........((((..(((((((.((............)).))))))).))))........... ( -13.40) >consensus CCCGAAAAUCGAUAGCAACGAACGU_CGC__CCUGUUCGAUAAGCACG_CCAAAGCAAAUUAUCGCUUUCUUUCCAGAAAGUUCGCGAAGCCAAUAAGUUCU ..((((...((((((............................................))))))(((((......)))))))))................. ( -3.18 = -4.02 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:36 2006