Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,197,718 – 11,197,812 |
Length | 94 |
Max. P | 0.770553 |
Location | 11,197,718 – 11,197,812 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 75.22 |
Mean single sequence MFE | -44.18 |
Consensus MFE | -22.86 |
Energy contribution | -22.50 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.19 |
Mean z-score | -1.84 |
Structure conservation index | 0.52 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.770553 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11197718 94 - 22224390 GCUGGAAGUCAGAUUGCC-AGC-----GCUGGUCGCGCUGGCAUUGGCAUUGACAUUUUUCGCCUUCGGUGGACGUCCACGUCCACGCUUGACGGGCGGC .......(((((..((((-(((-----((.....))))))))))))))...........((((((((((((((((....)))))))...))).)))))). ( -43.50) >DroPse_CAF1 4566 97 - 1 ACUGGAGGCGAGCUUGGGCUGGGGCGUGCUGGUGGCGGCAGCCGCUGCU---GCGUUCGCCGAUUUGGGUGGACGUCCACGUCCACGCUUCACUGGCGGC .(..(.(((((((...(((.(.(((.(((((....)))))))).).)))---..)))))))((...(.(((((((....))))))).).)).)..).... ( -47.20) >DroSec_CAF1 6251 94 - 1 GGUGGAAGUCAGAUUGCC-GGC-----ACUGGUCGCGCUGGCAUUGGCAUUGACAUUUUUCGCCUUCGGUGGACGUCCACGUCCACGCUUGACGGGCGGC .((.((.(((((..((((-(((-----.(.....).)))))))))))).)).)).....((((((((((((((((....)))))))...))).)))))). ( -40.00) >DroSim_CAF1 7280 94 - 1 GUUGGAAGUCAGAUUGCC-GGC-----GCUGGUCGCGCUGGCAUUGGCAUUGACAUUUUUCGCCUUCGGUGGACGUCCACGUCCACGCUUGACGGGCGGC ((..(..(((((..((((-(((-----((.....)))))))))))))).)..)).....((((((((((((((((....)))))))...))).)))))). ( -44.50) >DroYak_CAF1 7403 85 - 1 ---GGAAGUCAGAUUGCC-GGC-----GCUGGUCGCGUUGGCAUUGGCAU------AGCUCGCCUUCGGUGGACGUCCACGUCCACGCUUGACGGGCGGC ---....(((((..((((-(((-----((.....))))))))))))))..------.((.(((((((((((((((....)))))))...))).))))))) ( -41.70) >DroPer_CAF1 4443 97 - 1 ACUAGAGGCGAGCUUGGGCUGGGGCGUGCUGGUGGCGGCAGCCGCUGCU---GCGUUCGCCGAUUUGGGUGGACGUCCACGUCCACGCUUCACUGGCGGC .((((.(((((((...(((.(.(((.(((((....)))))))).).)))---..)))))))((...(.(((((((....))))))).).)).)))).... ( -48.20) >consensus GCUGGAAGUCAGAUUGCC_GGC_____GCUGGUCGCGCUGGCAUUGGCAU__ACAUUUUUCGCCUUCGGUGGACGUCCACGUCCACGCUUGACGGGCGGC ...........................((((.(((..(.(((...(((.............)))....(((((((....)))))))))).).))).)))) (-22.86 = -22.50 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:35 2006