Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,191,401 – 11,191,516 |
Length | 115 |
Max. P | 0.618149 |
Location | 11,191,401 – 11,191,516 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.67 |
Mean single sequence MFE | -39.30 |
Consensus MFE | -28.85 |
Energy contribution | -28.72 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.17 |
Mean z-score | -1.56 |
Structure conservation index | 0.73 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618149 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11191401 115 + 22224390 GUAGACGCCACAUAGAAAGCGAUGGCAGG-----UGGCUAAGUGACUUACCCCUCUGCGUGGUGUUGAACCAAUUGAACCAGGCCUGGACACGCGGAUAGAGCCGCUCCAGCGUGGCCAA ...((((((((.((((..((....)).((-----.((.((((...)))))))))))).))))))))............(((.((.((((...((((......)))))))))).))).... ( -39.60) >DroSim_CAF1 950 115 + 1 GUAGACGCCACAUAGAAAGCGAUGGCAGG-----UGGCUUGGUGACUUACCCUUCUGCGUGGUGUUGAACCAAUUGAACCAGGCCUGGACACGCGGAUACAGCCGCUCCAGCGUGGCCAA ...((((((((.(((((.((....)).((-----(((...(....)))))).))))).))))))))............(((.((.((((...((((......)))))))))).))).... ( -40.10) >DroEre_CAF1 2157 115 + 1 AUGAACACCACUUAGACAAGGAUAGCAGG-----CAACGUAGUAACUUACCCUUCUGCGUGGUGUUAAACCAGUUGAACCAGGCCUGCACACGCGGAUACAGCCGCUCCAGUGUGGCUAA ...((((((((.((((..(((......(.-----...)((((....))))))))))).))))))))...............((((.((((..((((......))))....)))))))).. ( -35.20) >DroYak_CAF1 921 120 + 1 AUGAACACCACAUAGACAGGGAUAGCAGGAUAGGUGACUUAAUAACUUACCCUUCUGCGUGGUGUUAAACCAAUUGAACCAGGCCUGCACACGCGGAUACAACCGCUCCAGCGUGGCCAA ...((((((((.((((.((((..((......((....))......))..)))))))).))))))))...............(((((((....((((......))))....))).)))).. ( -42.30) >consensus AUAAACACCACAUAGAAAGCGAUAGCAGG_____UGACUUAGUAACUUACCCUUCUGCGUGGUGUUAAACCAAUUGAACCAGGCCUGCACACGCGGAUACAGCCGCUCCAGCGUGGCCAA ...((((((((.((........))(((((......((........))......)))))))))))))............(((.((.((((...((((......)))))))))).))).... (-28.85 = -28.72 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:34 2006