Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,190,841 – 11,191,001 |
Length | 160 |
Max. P | 0.845670 |
Location | 11,190,841 – 11,190,961 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.75 |
Mean single sequence MFE | -41.85 |
Consensus MFE | -36.99 |
Energy contribution | -38.92 |
Covariance contribution | 1.94 |
Combinations/Pair | 1.05 |
Mean z-score | -1.48 |
Structure conservation index | 0.88 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595454 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11190841 120 + 22224390 CGGAUCACGCAGAUCGUUUAGCAACUUGGUCAGAUACGGCGAAUCGUGAUCCAGUUGCUCGAGCAGCAACGGAAACAGGCUAACAUAGCCAAAGGCGCUGUCCACGAACUGAUAGGUCGG ..((((...(((.((((..(((((((.((((((((.......))).))))).))))))).(..((((...(....).(((((...)))))......))))..))))).)))...)))).. ( -43.40) >DroSim_CAF1 391 120 + 1 CGGAUCGCGCAGAUCGUUUAGCAGCUUGGUCAGAUACGGCGAAUCGUGAUCCAGUUGCUCCAGCAGCAGCGGAAACAGGCUAACAUAGCCAAAGGCGCUGUCCACGAACUGAUAGGUCGG ..((((...(((.((((..(((((((.((((((((.......))).))))).)))))))...(((((.(((....).(((((...)))))....)))))))..)))).)))...)))).. ( -44.60) >DroEre_CAF1 1601 120 + 1 CGGAUCGCGCAGAUCGUGUAGCAAUUUGGUCAGAUACGGCGAAUCAUGAUCCAGCUGCUCCAGCAGCAGCGGAAACAGGCUAACAUAGCCAAAGGUGCUGUCCACGAACUGAUAGGUGGG ....((((.(((.(((((.((((.((.((((((((.......))).))))).)).))))...((((((.((....).(((((...)))))...).)))))).))))).)))....)))). ( -39.30) >DroYak_CAF1 364 120 + 1 CGGAUCGCGCAGGUCGUGUAGCAACUUGGUAAGAUACGGCGAAUCGUGAUCCAGUUGCUCCAGCAGCAGCGGAAACAGGCUAACAUAGCCGAAGGUACUGUCCACGAACUGAUAGGUGGG .((((((((...(((((((.((......))...)))))))....)))))))).((((((.....))))))(....).(((((...)))))...........((((..........)))). ( -40.10) >consensus CGGAUCGCGCAGAUCGUGUAGCAACUUGGUCAGAUACGGCGAAUCGUGAUCCAGUUGCUCCAGCAGCAGCGGAAACAGGCUAACAUAGCCAAAGGCGCUGUCCACGAACUGAUAGGUCGG ..((((...(((.(((((.(((((((.((((((((.......))).))))).)))))))...((((((.((....).(((((...)))))...).)))))).))))).)))...)))).. (-36.99 = -38.92 + 1.94)
Location | 11,190,881 – 11,191,001 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.36 |
Mean single sequence MFE | -46.52 |
Consensus MFE | -38.17 |
Energy contribution | -39.80 |
Covariance contribution | 1.63 |
Combinations/Pair | 1.06 |
Mean z-score | -2.02 |
Structure conservation index | 0.82 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845670 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11190881 120 + 22224390 GAAUCGUGAUCCAGUUGCUCGAGCAGCAACGGAAACAGGCUAACAUAGCCAAAGGCGCUGUCCACGAACUGAUAGGUCGGCAACUCGCCGGUCACACGUUGCAUCUCGGGCAGCUGGUAG ..........(((((((((((((..((((((......(((((...)))))...(((.(((((........)))))..((((.....)))))))...))))))..)))))))))))))... ( -52.50) >DroSim_CAF1 431 120 + 1 GAAUCGUGAUCCAGUUGCUCCAGCAGCAGCGGAAACAGGCUAACAUAGCCAAAGGCGCUGUCCACGAACUGAUAGGUCGGCGCCUCGCCGGUCACACGUCGCAUCUCGGGCAGCUGGUAG ..........((((((((((.((..((.(((......(((((...)))))..((((((((.((...........)).)))))))))))((......))..))..)).))))))))))... ( -47.00) >DroEre_CAF1 1641 120 + 1 GAAUCAUGAUCCAGCUGCUCCAGCAGCAGCGGAAACAGGCUAACAUAGCCAAAGGUGCUGUCCACGAACUGAUAGGUGGGCUCCUCACCGGUCACACGUUCCAUUUCGGGCUGCUGGUAG ..........(((((.((.((.((((((.((....).(((((...)))))...).))))))....((((((((.((((((...)))))).))))...))))......)))).)))))... ( -46.00) >DroYak_CAF1 404 120 + 1 GAAUCGUGAUCCAGUUGCUCCAGCAGCAGCGGAAACAGGCUAACAUAGCCGAAGGUACUGUCCACGAACUGAUAGGUGGGCUCCUCGCCGGUCACACGUUUCAUCUCCGGCUGCUGGUAG .....(..((...))..).((((((((..((((....(((((...)))))(((((......))(((...((((.((((((...)))))).))))..))))))...))))))))))))... ( -40.60) >consensus GAAUCGUGAUCCAGUUGCUCCAGCAGCAGCGGAAACAGGCUAACAUAGCCAAAGGCGCUGUCCACGAACUGAUAGGUCGGCUCCUCGCCGGUCACACGUUGCAUCUCGGGCAGCUGGUAG ..........((((((((((..((((((.((....).(((((...)))))...).))))))..(((...((((.((((((...)))))).))))..)))........))))))))))... (-38.17 = -39.80 + 1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:33 2006