Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,184,640 – 11,184,755 |
Length | 115 |
Max. P | 0.894033 |
Location | 11,184,640 – 11,184,755 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 92.69 |
Mean single sequence MFE | -24.07 |
Consensus MFE | -21.73 |
Energy contribution | -22.23 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.11 |
Mean z-score | -1.52 |
Structure conservation index | 0.90 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894033 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11184640 115 + 22224390 AUCGCCGGCAAUCGCAUUUAUUAUGUAAUAGACGUAGUGAAUCACAAUUGGCAGCAGCACCAGGCCCGAGAUUAUUUGGAAAAUUAAUAACAAAACAAAUUGCAUGCGAUUGCAA .......(((((((((((((((((((.....)))))))))).........((((..((.....))(((((....)))))....................)))).))))))))).. ( -28.10) >DroPse_CAF1 4208 113 + 1 AUCGCCGGCAAUCGCAUUGAUUAUAUAAUAGAUGUAGUGUAUCACAAUUAAAAGCAGCACAAAGCCCGAUAUUAUUUGGAAAAUUAAUAACAAAACAAAUUGCAUGCGACUCC-- .((((..(((((.(((((.(((....))).))))).((((................)))).....((((......))))...................)))))..))))....-- ( -17.59) >DroSim_CAF1 4625 115 + 1 AUCGCCGGCAAUCGCAUUUAUUAUGUAAUAGACGUAGUGUAUCACAAUUGGCAGCAGCACCAGGCCCGAGAUUAUUUGGAAAAUUAAUAACAAAACAAAUUGCAUGCGAUUGCAA .......((((((((((.((((((((.....))))))))...........((((..((.....))(((((....)))))....................)))))))))))))).. ( -26.40) >DroEre_CAF1 4546 115 + 1 AUCGCCGGCAAUCGCAUUUAUUAUGUAAUAGACGUAGUGAAUCACAAUUGGCAGCAGCACCAAGCCCGAGAUUAUUUGGAAAAUUAAUAACAAAACAAAUUGCAUGCGAUUGCAA .......(((((((((((((((((((.....)))))))))).........((((..((.....))(((((....)))))....................)))).))))))))).. ( -28.20) >DroYak_CAF1 4542 115 + 1 AUCGCCGGCAAUCGCAUUUAUUAUGUAAUAGACGUAGUGAAUCACAAUUGGCAGCAGCACCAAGCCCGAGAUUAUUUGGAAAAUUAAUAACAAAACAAAUUGCAUGCGAUUGCAA .......(((((((((((((((((((.....)))))))))).........((((..((.....))(((((....)))))....................)))).))))))))).. ( -28.20) >DroAna_CAF1 5467 112 + 1 AUCACCGGCAAUCGCAUUUAUUAUGUAAUAGAUAUAGUGUAUCACAAUCAGAAGCAGCACAAAGCCCGAGAAUAUUUGGAAAAUUAAUAACAAAACAAAUUGCAUGCGACUC--- ...........((((((.((((((((.....))))))))..............(((((.....))(((((....))))).....................)))))))))...--- ( -15.90) >consensus AUCGCCGGCAAUCGCAUUUAUUAUGUAAUAGACGUAGUGAAUCACAAUUGGCAGCAGCACCAAGCCCGAGAUUAUUUGGAAAAUUAAUAACAAAACAAAUUGCAUGCGAUUGCAA .......((((((((((.((((((((.....))))))))..............(((((.....))((((......)))).....................))))))))))))).. (-21.73 = -22.23 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:26 2006