Locus 4254

Sequence ID X_DroMel_CAF1
Location 11,175,114 – 11,175,217
Length 103
Max. P 0.516191
window6991

overview

Window 1

Location 11,175,114 – 11,175,217
Length 103
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 81.49
Mean single sequence MFE -40.75
Consensus MFE -25.89
Energy contribution -27.67
Covariance contribution 1.78
Combinations/Pair 1.29
Mean z-score -1.54
Structure conservation index 0.64
SVM decision value -0.03
SVM RNA-class probability 0.516191
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11175114 103 + 22224390
GAAACCGCUGACAGAGGAGGAGGUCUUGAAGAUGAACAGCAUCGGUCAGGAUGGCAGUAAUCUGCUGCCAGCGGUGGU---CACCACUGCUCCUUUGGCGCCAUCU
((...(((...(((((((....(((((((.((((.....))))..)))))))((((((.....)))))).(((((((.---..)))))))))))))))))...)). ( -42.60)
>DroPse_CAF1 4603 106 + 1
UAAGCCCCUCACCGAGGAGGAGGUGCUCAAGAUGAACUGCAUAGGGCAGGAUGGCAGCAAUCUGCUGCCCGCUGUGGCUUGCACUACUGGCGUGGUGGCACCCUCC
......((((...)))).((((((((.((((.....((((.....))))...((((((.....))))))........))))((((((....))))))))).))))) ( -41.00)
>DroSim_CAF1 1873 103 + 1
GAAACCGCUGACAGAGGAGGAGGUUUUGAAGAUGAACAGCAUCGGUCAGGAUGGAAGUAAUCUGCUGCCAGCGGUGGU---CACCACUGCUCCCUUGGCGCCAUCU
((((((.((..(...)..)).))))))((.((((.....))))..)).((((((.(((.....)))(((((((((((.---..))))))).....)))).)))))) ( -32.70)
>DroYak_CAF1 1863 103 + 1
GAAACCUCUGACAGAGGAGGAGGUCUUGAAGAUGAACAGCAUCGGUCAGGAUGGCAGCAAUCUGCUGCCUGCGGUGGU---CACCACUGCUCCUUUGGCGCCCUCA
....((((.....))))..((((((((((.((((.....))))..)))))).((((((.....)))))).(((((((.---..)))))))...........)))). ( -42.60)
>DroAna_CAF1 1856 103 + 1
GAAGCCUCUGACGGAGGAGGAGGUGCUCAAGAUGAACUGCAUUGGCCAGGACGGGAGCAAUCUACUUCCAGCCGUGGU---CACCACGGCCCCCCUGGCUCCCUCU
....((((.....)))).((((((((............)))..(((((((..(((((.......))))).(((((((.---..)))))))...))))))).))))) ( -42.70)
>DroPer_CAF1 4488 106 + 1
GAAGCCUCUCACCGAGGAGGAGGUGCUCAAGAUGAACUGCAUAGGGCAGGAUAGCAGCAAUCUGCUGCCCGCUGUGGCUUGCACCACUGGCGUGGUGGCACCCUCC
....((((.....)))).((((((((............((.((.(((.((.((((((....)))))))).))).))))...((((((....))))))))).))))) ( -42.90)
>consensus
GAAACCUCUGACAGAGGAGGAGGUGCUCAAGAUGAACAGCAUCGGUCAGGAUGGCAGCAAUCUGCUGCCAGCGGUGGU___CACCACUGCCCCCUUGGCGCCCUCU
....((.(.....).)).(((((.......((((.....)))).((((((..((((((.....)))))).(((((((......)))))))...))))))..))))) (-25.89 = -27.67 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:22 2006