Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,172,863 – 11,172,958 |
Length | 95 |
Max. P | 0.635940 |
Location | 11,172,863 – 11,172,958 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.32 |
Mean single sequence MFE | -25.92 |
Consensus MFE | -10.43 |
Energy contribution | -10.78 |
Covariance contribution | 0.35 |
Combinations/Pair | 1.25 |
Mean z-score | -2.58 |
Structure conservation index | 0.40 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635940 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11172863 95 + 22224390 ---------CACAUUUCCAUAAAUAAUGCAAAGCAAUUUAAAUUGC-GCCAAUGCGCAGUUUUAAAG--------GCAAGGAAAAUUGGAAAAGCGAAU------GCGAAUGG-GGAAAC ---------....(..((((............((.....(((((((-((....))))))))).....--------))................((....------))..))))-..)... ( -21.50) >DroSec_CAF1 7520 96 + 1 ---------CACAUUUCCAUAAAUAAUGCAAAGCAAUUUAAAUUGC-GCCAAUGCGCAGUUUUUAAG--------GCAAGGAAAAUUGGAAAAGCGAAU------GGGAAUGGGGGAAAC ---------..(((((((((............((.....(((((((-((....))))))))).....--------))........(((......)))))------)))))))........ ( -24.60) >DroSim_CAF1 3022 96 + 1 ---------CACAUUUCCAUAAAUAAUGCAAAGCAAUUUAAAUUGC-GCCAAUGCGCAGUUUUUAAG--------GCAAGGAAAAUUGGAAAAGCGAAU------GGGAAUGGGGGAAAC ---------..(((((((((............((.....(((((((-((....))))))))).....--------))........(((......)))))------)))))))........ ( -24.60) >DroEre_CAF1 7539 95 + 1 ---------CACAUUUCCAUAAAUAAUGCAAAGCAAUUUAAAUUGC-GUCAAUGCGCAGUUUUCAAG--------GCAGGAAAAAUCGGAUAGGCGGAU------GGGAAUGG-GGAAAU ---------..(((((((((......(((...((.....(((((((-((....))))))))).....--------))..((....))......))).))------))))))).-...... ( -24.50) >DroYak_CAF1 2840 101 + 1 ---------CACAUUUCCAUAAAUGAUGCAAAGCAAUUUAAAUUGC-GCCAAUGCGCAGUUUUCAAG--------GCAGGGAAAAUCGGAAAAGCGGGUGGGAAUGGGAAUGG-GGAAAU ---------..(((((((((......(((...((.....(((((((-((....))))))))).....--------)).((.....))......))).......))))))))).-...... ( -26.62) >DroAna_CAF1 2991 110 + 1 CAGUCCCCCCACAGUCCCAUCAAUAAUGCAAAGCCAUUUAAAUGGGGGGCAUUGCGCAGUUUUGAACUGAAACUGUCGUGGGAAAU-GGAAAAAC---U------GCGAAUCCGGAGACA ..((((((((((.(((((.(((..((((......))))....)))))))).....((((((((.....)))))))).)))))....-(((.....---.------.....))))).))). ( -33.70) >consensus _________CACAUUUCCAUAAAUAAUGCAAAGCAAUUUAAAUUGC_GCCAAUGCGCAGUUUUCAAG________GCAAGGAAAAUUGGAAAAGCGAAU______GGGAAUGG_GGAAAC ...........(((((((........(((...(((((....))))).((....)))))...........................(((......)))........)))))))........ (-10.43 = -10.78 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:17 2006