Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,149,562 – 11,149,658 |
Length | 96 |
Max. P | 0.512624 |
Location | 11,149,562 – 11,149,658 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 80.67 |
Mean single sequence MFE | -8.97 |
Consensus MFE | -8.64 |
Energy contribution | -8.20 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.10 |
Mean z-score | 1.45 |
Structure conservation index | 0.96 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512624 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11149562 96 + 22224390 UUCCAUAUAUGUAUAUUCCAUUUCAUAUUCCCAUAGUGUUCGAAAUGUUUAUAGCAUCGAACGUAUAUCGUUUUGUCAGAUCCCCAUGCCGAAUCG .......((((.((((........))))...))))..((((((..(((.....)))))))))......((.((((.((........)).)))).)) ( -10.50) >DroSec_CAF1 63746 77 + 1 UUUCAUAUA-------------------GCCCAUAGUGUUUGAAAUGUUUAUAGCAUCGAACGUAUAUCGUUUUGUCAGAUCCCCAUGCCGAAUCG .........-------------------....(((.(((((((..(((.....)))))))))))))..((.((((.((........)).)))).)) ( -8.20) >DroEre_CAF1 64685 77 + 1 UUCCAUAUA-------------------GUCUAUAGUGUUUGAAAUGUUUAUAGCAUCGAACGUGUAUCGUUUUGUCAGAUCCCCAUGCCGAAUCU .........-------------------...((((.(((((((..(((.....))))))))))))))..(.((((.((........)).)))).). ( -8.20) >consensus UUCCAUAUA___________________GCCCAUAGUGUUUGAAAUGUUUAUAGCAUCGAACGUAUAUCGUUUUGUCAGAUCCCCAUGCCGAAUCG ................................(((.(((((((..(((.....)))))))))))))...(.((((.((........)).)))).). ( -8.64 = -8.20 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:12 2006