Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,131,525 – 11,131,633 |
Length | 108 |
Max. P | 0.999788 |
Location | 11,131,525 – 11,131,633 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 70.65 |
Mean single sequence MFE | -22.88 |
Consensus MFE | -14.79 |
Energy contribution | -15.71 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.11 |
Mean z-score | -3.23 |
Structure conservation index | 0.65 |
SVM decision value | 4.08 |
SVM RNA-class probability | 0.999788 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11131525 108 + 22224390 CCUAC-AAAAAAA----AAGAAUAAAAAUUAUAGCUUGGACAACAGUACGUAUGAGUAACAUCUUAGCUCACAGAUUGCUCAUACGCACCGUUGUU-UCCACUUGCGAG--UCAUU .....-.......----................((.((((((((.((.((((((((((..((((........)))))))))))))).)).))))..-))))...))...--..... ( -26.40) >DroSec_CAF1 46691 109 + 1 CCUAU-AACUACA----AAUAAUAAUAAUUAUAACCUGUACAACAGUACGUAUGGGUAACAUCUUAGCUCACAAAUUGCUCAUACGCACCGUUGUUUUUCACUUGAGAG--UCAUU .....-.......----......................(((((.((.(((((((((((................))))))))))).)).)))))(((((....)))))--..... ( -19.49) >DroSim_CAF1 15175 109 + 1 CCUAU-AACUACA----AAUAAUAAUAAUUAUAACCUGCACAACAGUGCGUAUGAGUAACAUCUUAGCUCACAAAUUGCUCAUACGCACCGUUGUUUUUCACUUCAGAG--UCAUU .....-.......----......................(((((.((((((((((((((................)))))))))))))).)))))..............--..... ( -25.69) >DroYak_CAF1 49471 112 + 1 CUUUCAAACUAAAUUACAAUAAUAAUAAUUAGAAACUGUACAACAGUACGUAUGAGUAAUAC-UUAGCAUUCAGAUUGCUCAUACGCACCGUUGUU-UUCACUGAAGAC--UCAUU .(((((.............((((....))))((((....(((((.((.((((((((((((.(-(........)))))))))))))).)).))))))-)))..)))))..--..... ( -24.90) >DroAna_CAF1 48171 90 + 1 ----G-AACUCUA----AACAGUUAUU-CCAUAACGC---CCACACUGCGUAUACGUAUUAU------------AUUACUCAUACGCACUGUUGCC-UCCAACCAGGACCUUGUUU ----.-......(----(((((((((.-..)))))((---..(((.(((((((..(((....------------..)))..))))))).))).)).-(((.....)))...))))) ( -17.90) >consensus CCUAC_AACUAAA____AAUAAUAAUAAUUAUAACCUGUACAACAGUACGUAUGAGUAACAUCUUAGCUCACAAAUUGCUCAUACGCACCGUUGUU_UUCACUUAAGAG__UCAUU .......................................(((((.((.(((((((((((................))))))))))).)).)))))..................... (-14.79 = -15.71 + 0.92)
Location | 11,131,525 – 11,131,633 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 70.65 |
Mean single sequence MFE | -31.36 |
Consensus MFE | -22.20 |
Energy contribution | -22.70 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.24 |
Mean z-score | -3.49 |
Structure conservation index | 0.71 |
SVM decision value | 3.96 |
SVM RNA-class probability | 0.999731 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11131525 108 - 22224390 AAUGA--CUCGCAAGUGGA-AACAACGGUGCGUAUGAGCAAUCUGUGAGCUAAGAUGUUACUCAUACGUACUGUUGUCCAAGCUAUAAUUUUUAUUCUU----UUUUUUU-GUAGG .....--..(....)((((-..((((((((((((((((..((((........))))....))))))))))))))))))))..((((((...........----.....))-)))). ( -34.39) >DroSec_CAF1 46691 109 - 1 AAUGA--CUCUCAAGUGAAAAACAACGGUGCGUAUGAGCAAUUUGUGAGCUAAGAUGUUACCCAUACGUACUGUUGUACAGGUUAUAAUUAUUAUUAUU----UGUAGUU-AUAGG .((((--((..(((((((...(((((((((((((((((((.((((.....)))).))))...)))))))))))))))...(((.......))).)))))----)).))))-))... ( -29.90) >DroSim_CAF1 15175 109 - 1 AAUGA--CUCUGAAGUGAAAAACAACGGUGCGUAUGAGCAAUUUGUGAGCUAAGAUGUUACUCAUACGCACUGUUGUGCAGGUUAUAAUUAUUAUUAUU----UGUAGUU-AUAGG .....--.((((.........(((((((((((((((((..((((........))))....))))))))))))))))).))))((((((((((.......----.))))))-)))). ( -35.90) >DroYak_CAF1 49471 112 - 1 AAUGA--GUCUUCAGUGAA-AACAACGGUGCGUAUGAGCAAUCUGAAUGCUAA-GUAUUACUCAUACGUACUGUUGUACAGUUUCUAAUUAUUAUUAUUGUAAUUUAGUUUGAAAG .....--...(((((....-.(((((((((((((((((.(((((........)-).))).))))))))))))))))).......((((..(((((....))))))))).))))).. ( -31.30) >DroAna_CAF1 48171 90 - 1 AAACAAGGUCCUGGUUGGA-GGCAACAGUGCGUAUGAGUAAU------------AUAAUACGUAUACGCAGUGUGG---GCGUUAUGG-AAUAACUGUU----UAGAGUU-C---- (((((.(.(((......((-.((.(((.((((((((.(((..------------....))).)))))))).)))..---)).))..))-)....)))))----)......-.---- ( -25.30) >consensus AAUGA__CUCUCAAGUGAA_AACAACGGUGCGUAUGAGCAAUCUGUGAGCUAAGAUGUUACUCAUACGUACUGUUGUACAGGUUAUAAUUAUUAUUAUU____UGUAGUU_AUAGG .....................(((((((((((((((((..((((........))))....)))))))))))))))))....................................... (-22.20 = -22.70 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:06 2006