Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,131,291 – 11,131,416 |
Length | 125 |
Max. P | 0.895405 |
Location | 11,131,291 – 11,131,383 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 89.84 |
Mean single sequence MFE | -27.94 |
Consensus MFE | -21.46 |
Energy contribution | -21.46 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.08 |
Mean z-score | -1.85 |
Structure conservation index | 0.77 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.802564 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11131291 92 + 22224390 GCCUGUAAAUCCUCUAAGCCACAAUAUUUACUGUGAUGGCACAGUGGGCGAUGUGGGCAUACAACGGA-AAAGAAAAGGGGCGCCAGCAGUAG ..((((....(((((...(((((.(.(((((((((....))))))))).).)))))........(...-...)...))))).....))))... ( -23.50) >DroSec_CAF1 46450 93 + 1 GCCUGUAAAUCCUAUAAGCCACAAUAUUUACUGUGAUGGCACAGUGGGCGAUGUGGGCAUGCAACGGGGCAAAAAAAGGGGCGCCAGCAGUAG ((.((((...((((((.(((........(((((((....))))))))))..))))))..))))..((.((..........)).)).))..... ( -25.70) >DroSim_CAF1 14934 93 + 1 GCCUGUAAAUCCUCUAAGCCACAAUAUUUACUGUGAUGGCACAGUGGGUGAUGUGGGCAUGCAACGGGGCAAAAAAAGGGGCGCCAGCAGUGG .(((((....(((((...(((((.(((((((((((....))))))))))).)))))...(((......))).....))))).....)))).). ( -31.40) >DroEre_CAF1 46255 90 + 1 GCCUGUAAAUCCUCUAAGCCACAAUAUUUACUGUGAUGGCACAGUGGGCAAUGUGGGCAGACAACAGA---AAAACUGGGGCGGCAACAGAAG ((((........(((...(((((.(.(((((((((....))))))))).).)))))..)))...(((.---....)))))))(....)..... ( -25.60) >DroYak_CAF1 49261 90 + 1 GCCUGUAAAUCCUCUAAGCCACAAUAUUUACUGUGAUGGCACAGUGGGUGUUGUGGGCAUACAACGGG---AAAAAAGGGGAGGCAACAGUAG ..((((...((((((...(((((((((((((((((....))))))))))))))))).....(....).---.....))))))....))))... ( -33.50) >consensus GCCUGUAAAUCCUCUAAGCCACAAUAUUUACUGUGAUGGCACAGUGGGCGAUGUGGGCAUACAACGGG__AAAAAAAGGGGCGCCAGCAGUAG ..((((....(((((...(((((.(.(((((((((....))))))))).).)))))(....)..............))))).....))))... (-21.46 = -21.46 + 0.00)
Location | 11,131,305 – 11,131,416 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 89.68 |
Mean single sequence MFE | -30.28 |
Consensus MFE | -21.44 |
Energy contribution | -22.22 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.09 |
Mean z-score | -2.82 |
Structure conservation index | 0.71 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11131305 111 + 22224390 UAAGCCACAAUAUUUACUGUGAUGGCACAGUGGGCGAUGUGGGCAUACAACGGA-AAAGAAAAGGGGCGCCAGCAGUAGUAAUACGAAAAUGGGGUGCGAAAAAACCAGAAA ....(((((.(.(((((((((....))))))))).).)))))............-.........(.((.(((...(((....))).....))).)).).............. ( -27.20) >DroSec_CAF1 46464 112 + 1 UAAGCCACAAUAUUUACUGUGAUGGCACAGUGGGCGAUGUGGGCAUGCAACGGGGCAAAAAAAGGGGCGCCAGCAGUAGUUAUACGAAAAUGGGGUGCGAAAAAACCAGAAA ....(((((.(.(((((((((....))))))))).).)))))((((.(...((.((..........)).))....(((....))).......).)))).............. ( -29.10) >DroSim_CAF1 14948 112 + 1 UAAGCCACAAUAUUUACUGUGAUGGCACAGUGGGUGAUGUGGGCAUGCAACGGGGCAAAAAAAGGGGCGCCAGCAGUGGUAAUACGAAAAUGGUGUGCGAAAAAACCAGAAA ....(((((.(((((((((((....))))))))))).)))))((((((...((.((..........)).))....(((....))).......)))))).............. ( -33.90) >DroEre_CAF1 46269 108 + 1 UAAGCCACAAUAUUUACUGUGAUGGCACAGUGGGCAAUGUGGGCAGACAACAGA---AAAACUGGGGCGGCAACAGAAGUAAUACGAAAAUGGGGUGCGAAAA-ACCCAAAA ....(((((.(.(((((((((....))))))))).).)))))((.(.(..(((.---....)))..)).)).....................((((.......-)))).... ( -27.80) >DroYak_CAF1 49275 108 + 1 UAAGCCACAAUAUUUACUGUGAUGGCACAGUGGGUGUUGUGGGCAUACAACGGG---AAAAAAGGGGAGGCAACAGUAGUAAUACGAAAAUGGGGUGCGAAAA-ACCUGAAA ....(((((((((((((((((....)))))))))))))))))((((.((.....---...........(....).(((....))).....))..)))).....-........ ( -33.40) >consensus UAAGCCACAAUAUUUACUGUGAUGGCACAGUGGGCGAUGUGGGCAUACAACGGG__AAAAAAAGGGGCGCCAGCAGUAGUAAUACGAAAAUGGGGUGCGAAAAAACCAGAAA ....(((((.(.(((((((((....))))))))).).)))))(((..(....................(....).(((....))).......)..))).............. (-21.44 = -22.22 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:05 2006