Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,128,640 – 11,128,732 |
Length | 92 |
Max. P | 0.757554 |
Location | 11,128,640 – 11,128,732 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 66.55 |
Mean single sequence MFE | -18.05 |
Consensus MFE | -7.41 |
Energy contribution | -7.92 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.31 |
Mean z-score | -1.74 |
Structure conservation index | 0.41 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757554 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11128640 92 + 22224390 AAUAUCUUGGGACAAACGCAGGGACAUGUUC------UUGUCGUCCUUUAUCUG--GGCUUUAUCCCUCCUUUCCCCACAUACACACCCCCCCUCCCCCU- ........((((.....(((((((....)))------)))).((((.......)--)))....)))).................................- ( -16.70) >DroPse_CAF1 43109 92 + 1 AGUAUCUGGGGACCUACAGACAGUCA--GUCUUGCCUUUGUCGUCCUUUCUUUCAAUGCUGCCACUCUCUGUCCUC-GUCU-AACCUCGCACAUUU----- .......((((((....(((.(((((--((.(((...................))).))))..))).)))))))))-....-..............----- ( -14.21) >DroSec_CAF1 43951 86 + 1 AAUAUCUUGGGACAAACGCAGGGACAUGUUCUUGUUCUUGUCGUCCUUUAUCUG--GGCUUUAUCCCUCCUUUCCCCACUUCCACCCC------------- ........((((.....(((((((((......))))))))).((((.......)--)))....)))).....................------------- ( -20.80) >DroEre_CAF1 43542 89 + 1 AAUAUCUUGGGACAAACGCAGGAACAUGUUCUUGUUCUUGUCGUCCUUUAUCUG--GGCUGUAUCCCUUGUUACCCC----ACAUCCUCGACGUC------ .......((((((((..(((((((((......))))))))).((((.......)--)))........))))...)))----).............------ ( -21.60) >DroYak_CAF1 46558 94 + 1 AAUAUCUUGGGACAAACGCAGGGACAUGUUCUUGUUCUUGUCGUCCUUUAUCUG--GGCUACCUCCCUCCAUCCCCC-CAUUCACCCACCACAUCC----C .......((((......(((((((((......))))))))).((((.......)--)))..................-......))))........----. ( -20.80) >DroPer_CAF1 43290 92 + 1 AGUAUCUGGGGACCUACAGACAGUCA--GUCUUGCCUUUGUCGUCCUUUCUUUCAAUGCUGCCACUCUCUGUCCUC-GUCU-AACCUCGCACAUUU----- .......((((((....(((.(((((--((.(((...................))).))))..))).)))))))))-....-..............----- ( -14.21) >consensus AAUAUCUUGGGACAAACGCAGGGACAUGUUCUUGUUCUUGUCGUCCUUUAUCUG__GGCUGCAUCCCUCCUUCCCCC_CAU_CACCCCCCACAUC______ ........(((((....((((((.((......)).)))))).)))))...................................................... ( -7.41 = -7.92 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:03 2006