Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,125,699 – 11,125,798 |
Length | 99 |
Max. P | 0.964146 |
Location | 11,125,699 – 11,125,798 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 84.51 |
Mean single sequence MFE | -19.91 |
Consensus MFE | -15.93 |
Energy contribution | -15.93 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.84 |
Structure conservation index | 0.80 |
SVM decision value | 1.56 |
SVM RNA-class probability | 0.964146 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11125699 99 - 22224390 CCCAGUUUUCCUCCUCGUCUGCUGCUGCCAUUUCCUCUUGGCCAUUCAUUGCCUUCAUCAUCUUGGCCAAUUCCUGGGAGAGAGUCCUUGUACACUUUU (((((...............((....)).........(((((((...................)))))))...))))).((((((........)))))) ( -19.81) >DroEre_CAF1 39755 86 - 1 CCCAGUUUUCCUCUU---------CCGCCUCUUUCUCUUGGCCA----UUGCCUUCAUCAUCUUGGCCAAUUCCUGGGAGAGAGUCCUUGCACACUUUU ...............---------..((((((((((((((((((----...............))))))).....))))))))).....))........ ( -20.66) >DroYak_CAF1 43668 86 - 1 CCCAGUUUCUCUCUU---------CUGCCUUUUCCACUUGGCCA----UUGCCUUCAUCAUCUUGGCCAAUUCCUGGGAGAGAGUCCUUGCACACUUUU ..(((...(((((((---------((...........(((((((----...............))))))).....)))))))))...)))......... ( -19.25) >consensus CCCAGUUUUCCUCUU_________CUGCCUUUUCCUCUUGGCCA____UUGCCUUCAUCAUCUUGGCCAAUUCCUGGGAGAGAGUCCUUGCACACUUUU (((((.....................(((..........)))........(((...........)))......))))).((((((........)))))) (-15.93 = -15.93 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:02 2006