Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,124,963 – 11,125,058 |
Length | 95 |
Max. P | 0.741222 |
Location | 11,124,963 – 11,125,058 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 82.33 |
Mean single sequence MFE | -21.50 |
Consensus MFE | -19.33 |
Energy contribution | -18.22 |
Covariance contribution | -1.11 |
Combinations/Pair | 1.19 |
Mean z-score | -1.50 |
Structure conservation index | 0.90 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741222 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11124963 95 + 22224390 AGCGCUGUCUGCAUAUUAAAACGCUGUCAAAAUUUGCACGGCUAAGUGUCAUUUCAUUUGACGCUAC-CCUCUCUUUCACA--UUAGCUC-----------GUGCCGUC-- ((((.................))))..........((((((((((((((((.......)))))))..-.............--.)))).)-----------))))....-- ( -20.82) >DroPse_CAF1 39399 92 + 1 AGCGCUGCCUGCAUAUUAAAAUGCUGUCAAAAU-UGCACGGCUAAAUGUCAUUUCAUUUGGCAUUGC-UCUG-CUUUCAC----------------UCCGUGUGCCACCCU .((((((.(.((((......)))).).))....-.(((..((((((((......))))))))..)))-....-.......----------------.....))))...... ( -20.90) >DroSec_CAF1 40304 94 + 1 AGCGCUGUCUGCAUAUUAAAACGCUGUCAAAAU-UGCACGGCUAAGUGUCAUUUCAUUUGACGCUUC-CCUCUCUUUCACU--UUAGCUC-----------GUGCCGUC-- .((((.(...((..........(((((((....-)).))))).((((((((.......)))))))).-.............--...)).)-----------))))....-- ( -20.90) >DroEre_CAF1 39018 95 + 1 AGCGCUGUCUGCAUAUUAAAACGCUGUCAAAAU-UGCACGGCUAAGUGUCAUUUCAUUUGACGCUUCCCCUCUCUUUCACU--GUCGCUC-----------GUGCCAUC-- .((((.(...((..........(((((((....-)).))))).((((((((.......))))))))...............--...)).)-----------))))....-- ( -21.00) >DroYak_CAF1 42963 94 + 1 AGCGCUGUCUGCAUAUUAAAACGCUGUCAAAAU-UGCACGGCUAAGUGUCAUUUCAUUUGACGCUUU-CCUCUCUUUCACU--CUCGCUC-----------GUGCCAUC-- .((((.(...((..........(((((((....-)).))))).((((((((.......)))))))).-.............--...)).)-----------))))....-- ( -21.00) >DroPer_CAF1 39595 108 + 1 AGCGCUGCCUGCAUAUUAAAAUGCUGUCAAAAU-UGCACGGCUAAAUGUCAUUUCAUUUGGCAUUGC-UCUC-CUUUCACUCACCCGCUCUGGCCCUCCGUGUGCCACCCU ((((.((.(.((((......)))).).))....-.(((..((((((((......))))))))..)))-....-............)))).((((.(.....).)))).... ( -24.40) >consensus AGCGCUGUCUGCAUAUUAAAACGCUGUCAAAAU_UGCACGGCUAAGUGUCAUUUCAUUUGACGCUUC_CCUCUCUUUCACU__CUCGCUC___________GUGCCAUC__ .((((.(((((((.(((.............))).)))).)))..(((((((.......)))))))....................................))))...... (-19.33 = -18.22 + -1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:01 2006