| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,239,687 – 1,239,846 |
| Length | 159 |
| Max. P | 0.518419 |
| Location | 1,239,687 – 1,239,795 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 84.46 |
| Mean single sequence MFE | -35.53 |
| Consensus MFE | -21.95 |
| Energy contribution | -24.20 |
| Covariance contribution | 2.25 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1239687 108 + 22224390 CCUCCUGAGUCCCGGAAAAACGGAAAAAAGCGGAGCAGAGGAUGAGCGGCAA------GGGGGACGAUGGUGCGGCGAUGCUGCCAAAAAUAAAUUUGAACUCAAAUCGCAGCG ((((((.....(((......)))......((.(..((.....))..).)).)------))))).....(.(((((((....))))........(((((....))))).))).). ( -31.00) >DroSec_CAF1 6997 107 + 1 CCUCCUGAGUCCCGGAAAAACGGGA-AAAGCGGAGCAGAGGAUGGGUGGCAA------GGGGGGCGGUGGUGCUGCGAUGCUGCCAAAAAUAAAUUUGAACUCAAAUCGCAGCG ((((((...(((((......)))))-...((.(..((.....))..).)).)------)))))........((((((((..((.((((......))))....)).)))))))). ( -35.90) >DroEre_CAF1 7181 99 + 1 CCCCCUGAGUCCCGGAAAAACGGGA-AAAGAGGACGAGCGGC--------GA------GGGGGGCGGUGCUGCGGCGAUGCUGCCAAAAAUAAAUUUGAACUCAAAUCGCAGCG ((((((...(((((......)))))-........((.....)--------))------))))).....(((((((((....))))........(((((....))))).))))). ( -37.70) >DroYak_CAF1 7192 113 + 1 CCCCCUGAGUCCCGGAAAAACGGGA-AAAGCGGAGCAGCGGCCGAGUGGUAAGGGGUGGGGAGGCGGUGUUGAGGCAAUGCUGCCAAAAAUAAAUUUGAACUCAAAUCGCAGCG ..((((...(((((......)))))-..)).)).((.((((..((((..((((..((.....((((((((((...))))))))))....))...)))).))))...)))).)). ( -37.50) >consensus CCCCCUGAGUCCCGGAAAAACGGGA_AAAGCGGAGCAGAGGAUGAGUGGCAA______GGGGGGCGGUGGUGCGGCGAUGCUGCCAAAAAUAAAUUUGAACUCAAAUCGCAGCG (((((....(((((......)))))....((.(..((.....))..).))........))))).....(((((((((....))))........(((((....))))).))))). (-21.95 = -24.20 + 2.25)
| Location | 1,239,755 – 1,239,846 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.93 |
| Mean single sequence MFE | -29.59 |
| Consensus MFE | -16.17 |
| Energy contribution | -17.26 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.55 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1239755 91 + 22224390 GCGAUGCUGCCAAAAAUAAAUUUGAACUCAAAUCGCAGCGUCAGGCGCGA----AG--------GGUGAGGCGA-----C-UGGGUGCCAAGAAACGCUGCCAACGCAA----------- ((((((((((.........(((((....))))).)))))))).((((((.----..--------.....((((.-----.-....))))......))).)))...))..----------- ( -28.14) >DroSec_CAF1 7064 91 + 1 GCGAUGCUGCCAAAAAUAAAUUUGAACUCAAAUCGCAGCGUCAGGCGCGA----GG--------GGCGAGGCGA-----C-CGGGUGCCAAGAAACGCUGCCAACGCAA----------- ((((((((((.........(((((....))))).)))))))).((((((.----..--------((((.((...-----)-)...))))......))).)))...))..----------- ( -30.70) >DroEre_CAF1 7240 102 + 1 GCGAUGCUGCCAAAAAUAAAUUUGAACUCAAAUCGCAGCGUCAGGCGCGA----GG--------GGCGCGGCAA-----A-CGGGUGGCAAGAAACGCUGCCAACGCAACGCCAUCACCA ..((((((((.........(((((....))))).)))))))).(((....----).--------((((..((..-----.-..((..((.......))..))...))..))))....)). ( -35.00) >DroWil_CAF1 17372 96 + 1 GCGCUGCUGCCAAAAAUAAAUUUGAACUCAAAUCGUGGAA-CAGGCC-GACAACUA--------GGCAAUGAAAACCGAUUCGAUUGCCAAGAAAA---ACCAACGCGG----------- .(((.(((.(((.......(((((....)))))..)))..-..))).-.....((.--------(((((((((......))).)))))).))....---......))).----------- ( -20.30) >DroYak_CAF1 7265 104 + 1 GCAAUGCUGCCAAAAAUAAAUUUGAACUCAAAUCGCAGCGUCAGGCGCGA----GGGGCGGAGGGGCGCGGCAA-----A-CGGGUGGCAAGAAGCGCUGCCAACGCAAAGCAA------ ((..(((((((........(((((....)))))....(((((...(((..----...)))....))))))))).-----.-..((..((.......))..))...)))..))..------ ( -33.80) >consensus GCGAUGCUGCCAAAAAUAAAUUUGAACUCAAAUCGCAGCGUCAGGCGCGA____GG________GGCGAGGCAA_____A_CGGGUGCCAAGAAACGCUGCCAACGCAA___________ ((((((((((.........(((((....))))).)))))))).((((((...............(((((...............)))))......))).)))...))............. (-16.17 = -17.26 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:15 2006