Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,119,343 – 11,119,444 |
Length | 101 |
Max. P | 0.945815 |
Location | 11,119,343 – 11,119,444 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 78.59 |
Mean single sequence MFE | -26.76 |
Consensus MFE | -9.79 |
Energy contribution | -11.43 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.17 |
Mean z-score | -2.46 |
Structure conservation index | 0.37 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.945815 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11119343 101 - 22224390 AAUAGUUUGUUUUGCCGCUCCAUUAAAAGACAACUUGUUUUAGUGGCGAAAA--AAGGCCAAUUACCAGGCUGGCAAUUUCAAUUGCGA-AAGU-GCCAAGAACG ....((((.((((((((((.......(((((.....))))))))))))))).--..((((........))))((((.((((......))-)).)-)))..)))). ( -29.41) >DroSec_CAF1 34705 100 - 1 AAUAGUUUGUUUUGCCGCUCCAUUAAAAGACAACUUGUUUUAGUGGCGAAAA--AA-GCCAAUUACCAGGCUGGCAAUUUCAAUUGCGA-AAGU-GCCAAGAACA ....((((.((((((((((.......(((((.....))))))))))))))).--.(-(((........))))((((.((((......))-)).)-)))..)))). ( -29.41) >DroEre_CAF1 33413 101 - 1 AAUAGUUUGCUUUGCCGCUCCAUUAAAAGACAACUUGUUUUAGUGGCGAAAA--AA-GGCAAUUACCAGGCUGGCAAUUUCAAUUGCGAAAAGU-GCCAAGAACU ...((((((..(((((.(.(((((((((.(.....).))))))))).)....--..-)))))....))))))((((.((((......))))..)-)))....... ( -26.50) >DroYak_CAF1 37386 102 - 1 AAUAGUUUGUUUUGCCGCUCCAUUAAAACCCAACUUGUUUUAGUGGCGAAAAAUAA-UGCAAUUACCAGGCUGGCAAUUUCAAUUGCGA-AAGU-GCCAAGAACA .......(((((((((....(((((((((.......)))))))))(((........-)))........)))(((((.((((......))-)).)-)))))))))) ( -25.30) >DroAna_CAF1 34938 80 - 1 AAUAGUUUGCU-UGCCGCUCCAUUAAAAGGCC----------------A--A--AA-GCAAUUAACCAAGUUGGCCUGGCCCAGUCUGAGUCCUGGCCAGGA--- ......(((((-((((............))).----------------.--.--))-))))....((.....))(((((((.((........))))))))).--- ( -23.20) >consensus AAUAGUUUGUUUUGCCGCUCCAUUAAAAGACAACUUGUUUUAGUGGCGAAAA__AA_GCCAAUUACCAGGCUGGCAAUUUCAAUUGCGA_AAGU_GCCAAGAACA ...((((((((((((((((......................))))))))))...............))))))(((.((((..........)))).)))....... ( -9.79 = -11.43 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:55 2006