Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,111,977 – 11,112,076 |
Length | 99 |
Max. P | 0.569533 |
Location | 11,111,977 – 11,112,076 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 72.16 |
Mean single sequence MFE | -21.84 |
Consensus MFE | -9.47 |
Energy contribution | -9.91 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.23 |
Mean z-score | -2.14 |
Structure conservation index | 0.43 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569533 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11111977 99 - 22224390 UCACUGCGCAUAUAGUUCGAAUGCAGUGCUUGGUUUAAUUUAUCGAAAGUAUAUGCAUGAGUAAUCAUGCGGUGAAAUGAAAUCAUUUCAAUUCAAUCU ..((((((((((((.(((((......................)))))..)))))))((((....)))))))))((((((....)))))).......... ( -26.45) >DroSec_CAF1 30677 82 - 1 UCACUGGACGUAUA--UCGAUUGCAGUGCUUGGUGUAAUUUAUCGAAAGCAUAUGCAUGAGUAAUCAUGCA---------------UUCAAUUCAAUCU ..............--..(((((..((((((((((.....))))..))))))((((((((....)))))))---------------)......))))). ( -21.50) >DroEre_CAF1 28325 88 - 1 UCGCUGGGCUUAUU--UU-------GUGCCUUGUUUAAUUUAUCAAAAGCAUAUGCGCGAGUAAUGCCGCAGUGAAAUU--AUCAUUUCAAUUCCAUCU (((((((((....(--((-------((((..(((((..........)))))...)))))))....))).))))))....--.................. ( -23.80) >DroYak_CAF1 33541 95 - 1 UCACUCGGUUUAUU--UUGGUUUCAGUGCUUUGCUUAAUUUAUCGAAUGCAUAUGCAUGAGUAAUCAUGGGUUAAAAUU--AUCAUUUCAAUUGAAUCU ......((((((..--((((.....((((((((.(......).)))).))))((.(((((....))))).)).......--......)))).)))))). ( -15.60) >consensus UCACUGGGCUUAUA__UCGAUUGCAGUGCUUGGUUUAAUUUAUCGAAAGCAUAUGCAUGAGUAAUCAUGCAGUGAAAUU__AUCAUUUCAAUUCAAUCU .........................((((((...............)))))).(((((((....)))))))............................ ( -9.47 = -9.91 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:53 2006