Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,098,152 – 11,098,268 |
Length | 116 |
Max. P | 0.634180 |
Location | 11,098,152 – 11,098,268 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.00 |
Mean single sequence MFE | -27.34 |
Consensus MFE | -16.30 |
Energy contribution | -17.22 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.26 |
Mean z-score | -1.88 |
Structure conservation index | 0.60 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634180 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11098152 116 - 22224390 CAACUUGUUGAGCGUGACCUGCUUGGAGUCAUAAAAAACAAAACGUGUUAUUGCUGAUGGGAAAAAAUGUGAAAGCUCAAUUUACCUAUCAGUUAACUCAACAAU----GUUGUAACUAU ((((((((((((.(((((((....)).)))))....................((((((((((((....((....))....))).)))))))))...)))))))).----))))....... ( -32.60) >DroSec_CAF1 17257 115 - 1 CAACUUGUUGAGCGUGACUUGUUUGGAGUCAUAAAAAAAAAAACGUUUUAUUGCGGGUGGGAA-AAAUGUGAAAGCUCAAUUUACCUAUCAGUUAACUCAACAAU----GUUGUAACUAU ((((((((((((.(((((((.....)))))))...........(((......)))((((((((-(...((....))....))).))))))......)))))))).----))))....... ( -29.90) >DroSim_CAF1 11644 114 - 1 CAACUUGUUGAGCGUGACUUGUUUGGAGUCAUAAAAA-GAAAACGUUUUAUUGCGGGUGGGAA-AAAUGUGAAAGCUCAAUUUACCUAUCAGUGAACUCAACAAU----UUUGUAACUAU ....((((((((.(((((((.....))))))).....-............(..(.((((((((-(...((....))....))).)))))).)..).)))))))).----........... ( -26.70) >DroEre_CAF1 15449 114 - 1 CAACUUGUUGAGCGUGACCGACUUGAAGUCGUAAA-----AAACGUGUUCUUUCAGGUGGCAA-AAAUGUGAAAGCUCCACUUACCCAUCAUCUAAUUUUCCUAUCAUUGUUAUAGGUUA .(((((((..(((((((.((((.....))))....-----....(((..((((((.((.....-..)).))))))...))).......................))).))))))))))). ( -20.40) >DroYak_CAF1 17392 118 - 1 CAACUUGUUGAGCGUGACUGCCUCGAAGUCAUAAAAA-AAAAACGUGUUAUUGCUGGUGGCAA-AAAUGUGAAAGCUCAAUUUAGCUAUCAUUUAAAUUAACUAUCAUGGAUAUAGUUGA ......(((((((((((((.......)))))).....-.....((..((.((((.....))))-.))..))...)))))))((((((((.(((((............))))))))))))) ( -27.10) >consensus CAACUUGUUGAGCGUGACUUGCUUGGAGUCAUAAAAA_AAAAACGUGUUAUUGCGGGUGGGAA_AAAUGUGAAAGCUCAAUUUACCUAUCAGUUAACUCAACAAU____GUUGUAACUAU ....((((((((.(((((((.....))))))).......................((((((.......((....))........))))))......))))))))................ (-16.30 = -17.22 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:51 2006