Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,096,063 – 11,096,159 |
Length | 96 |
Max. P | 0.954589 |
Location | 11,096,063 – 11,096,159 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 82.50 |
Mean single sequence MFE | -21.22 |
Consensus MFE | -12.68 |
Energy contribution | -12.50 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.09 |
Mean z-score | -2.85 |
Structure conservation index | 0.60 |
SVM decision value | 1.45 |
SVM RNA-class probability | 0.954589 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11096063 96 + 22224390 GCCAACCUUGCAACCUUUAUGCUGCAACCGAACAGUGUUGCAAAGUUGGUCAUACUCGAAGCAGUUAACCAUUUACUUUUAGCCCAACAUUUCAAC ((((((.(((((((......((((........))))))))))).))))))....((.((((.((........)).)))).)).............. ( -19.00) >DroSec_CAF1 15270 83 + 1 GCCAACCUUGCACC-------------ACGAACAGUGUUGCAAAGUUGGCGAUAUUCGAACCAGUUAACCAUUUACUUUUAGACCAAUAUUUUGAC ((((((.(((((.(-------------((.....))).))))).)))))).............................................. ( -20.80) >DroSim_CAF1 9670 83 + 1 GCCAACCUUGCACC-------------ACGAACAGUGUUGCAAAGUUGGCCAUAUUCGAACCAGUUAACCAUUUACUUUUAGACCAAUAUUUUGCC ((((((.(((((.(-------------((.....))).))))).)))))).............................................. ( -19.90) >DroEre_CAF1 13562 83 + 1 GCCAACCUUGCACC-------------ACGAACAGUGCUGCAAAGUUGGCCAUUUUCGAAACAGUUUGCCAUUUACUUUUAGCCAAAUCUUUCGAC ((((((.(((((.(-------------((.....))).))))).)))))).....((((((..(((((.(...........).))))).)))))). ( -25.20) >consensus GCCAACCUUGCACC_____________ACGAACAGUGUUGCAAAGUUGGCCAUAUUCGAACCAGUUAACCAUUUACUUUUAGACCAAUAUUUCGAC ((((((.(((((..........................))))).)))))).............................................. (-12.68 = -12.50 + -0.19)
Location | 11,096,063 – 11,096,159 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 82.50 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -15.82 |
Energy contribution | -16.07 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.12 |
Mean z-score | -2.76 |
Structure conservation index | 0.59 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.931887 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11096063 96 - 22224390 GUUGAAAUGUUGGGCUAAAAGUAAAUGGUUAACUGCUUCGAGUAUGACCAACUUUGCAACACUGUUCGGUUGCAGCAUAAAGGUUGCAAGGUUGGC .(((((..(((((.(((........))))))))...)))))......(((((((((((((.((((......)))).......))))))))))))). ( -26.90) >DroSec_CAF1 15270 83 - 1 GUCAAAAUAUUGGUCUAAAAGUAAAUGGUUAACUGGUUCGAAUAUCGCCAACUUUGCAACACUGUUCGU-------------GGUGCAAGGUUGGC ......(((((.(......(((.........)))....).))))).((((((((((((.(((.....))-------------).)))))))))))) ( -23.70) >DroSim_CAF1 9670 83 - 1 GGCAAAAUAUUGGUCUAAAAGUAAAUGGUUAACUGGUUCGAAUAUGGCCAACUUUGCAACACUGUUCGU-------------GGUGCAAGGUUGGC ......(((((.(......(((.........)))....).))))).((((((((((((.(((.....))-------------).)))))))))))) ( -24.00) >DroEre_CAF1 13562 83 - 1 GUCGAAAGAUUUGGCUAAAAGUAAAUGGCAAACUGUUUCGAAAAUGGCCAACUUUGCAGCACUGUUCGU-------------GGUGCAAGGUUGGC .((((((.(.((.((((........)))).)).).)))))).....((((((((((((.(((.....))-------------).)))))))))))) ( -33.40) >consensus GUCAAAAUAUUGGGCUAAAAGUAAAUGGUUAACUGGUUCGAAUAUGGCCAACUUUGCAACACUGUUCGU_____________GGUGCAAGGUUGGC .(((((...((((.(((........)))))))....))))).....((((((((((((.(......................).)))))))))))) (-15.82 = -16.07 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:49 2006