Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,089,073 – 11,089,171 |
Length | 98 |
Max. P | 0.534093 |
Location | 11,089,073 – 11,089,171 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 68.22 |
Mean single sequence MFE | -34.67 |
Consensus MFE | -14.77 |
Energy contribution | -15.42 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.21 |
Mean z-score | -1.59 |
Structure conservation index | 0.43 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534093 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11089073 98 - 22224390 C-AAGAAGGGUGAA--GCAGAUG-----------GGUGCUUCCAUGGCCCGGGGGCCACGAGGGAGAUCAGGAGGUCCCAAAGGGGGAGCAGAGCUGAGUAUCCUGGCAAGG-------- .-..(.((((((..--.(((...-----------..(((((((.(((((....)))))(...((.((((....))))))...).)))))))...)))..))))))..)....-------- ( -37.00) >DroPse_CAF1 8667 92 - 1 CCCAGAAGGGUGGUG----------------------G-CUCA---GUGCUGGGGGCUCAGGGGUGAUCAGG-GGUGCCAC-UGCGGAACAGAACAGAACAUCCCGGCAAAGCUGGGAAA .((....))(..(((----------------------(-(.(.---...((((..(((....)))..)))).-.).)))))-..)................(((((((...))))))).. ( -32.60) >DroSec_CAF1 8743 98 - 1 C-AAGAAGGGUGGA--GCAGAUG-----------GAGGCUUCCAUGGCCCGGGGGCCACGAGGGAGAUCAGGAGGUCCCAAAGGGGGAGCAGAGCUGAGUAUCCUGGCAAGG-------- .-..(.((((((..--.(((...-----------...((((((.(((((....)))))(...((.((((....))))))...).))))))....)))..))))))..)....-------- ( -35.40) >DroEre_CAF1 6523 99 - 1 U-AAGAAGGGUGGUCGACAGAAG-----------GGGGUUUCCAUGGCCCAGGGGCCACGAGGGGGAUCAGGAGGUCCCAA-AGGGGAGCAGAGCUGAGUAUCCUGGCAAGG-------- .-..(.((((((.(((.(.....-----------..(((..((.(((((....)))))....))..)))....(.((((..-..)))).)...).))).))))))..)....-------- ( -36.00) >DroYak_CAF1 8956 111 - 1 C-AAGAAGGGCGGUCGAGAGAAGGAAGGGGGGGGGGGGUUUCCAUGGCCCAGGGGCCACGAGGGAGAUCAGGAGGUCCCAAAAGGGGAGCACAGCUGAGUAUCCUGGCAAGG-------- .-.......((..((....))((((...........(((((((.(((((....)))))....)))))))....(.((((.....)))).)...........)))).))....-------- ( -34.40) >DroPer_CAF1 8656 92 - 1 CCCAGAAGGGUGGUG----------------------G-CUCA---GUGCUGGGGGCUCAGGGGUGAUCAGG-GGUGCCAC-UGCGGAACAGAACAGAACAUCCCGGCAAAGCUGGGAAA .((....))(..(((----------------------(-(.(.---...((((..(((....)))..)))).-.).)))))-..)................(((((((...))))))).. ( -32.60) >consensus C_AAGAAGGGUGGU___CAGA_G___________GGGG_UUCCAUGGCCCAGGGGCCACGAGGGAGAUCAGGAGGUCCCAA_AGGGGAGCAGAGCUGAGUAUCCUGGCAAGG________ .........((.................................(((((....)))))..((((...((((...((.((......)).))....))))...)))).))............ (-14.77 = -15.42 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:43 2006