Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,077,540 – 11,077,659 |
Length | 119 |
Max. P | 0.627260 |
Location | 11,077,540 – 11,077,659 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 90.62 |
Mean single sequence MFE | -38.23 |
Consensus MFE | -29.25 |
Energy contribution | -31.38 |
Covariance contribution | 2.12 |
Combinations/Pair | 1.06 |
Mean z-score | -1.68 |
Structure conservation index | 0.77 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627260 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11077540 119 + 22224390 CGCAGGCCACACUUUGAUGUCGCACGAAGGGAAAAGGACCUGCGAAAUUUCCACAGUAAUGAAAAGCUGUGCCGGCGACAUGGCACUUUUCACAUAGAAUUUGUGGAUAUCAUUAGGGC .....(((......(((((((.((((((.(((((((..((((((.......((((((........))))))....)).)).))..)))))).)......)))))))))))))....))) ( -35.00) >DroSec_CAF1 29299 119 + 1 CGCAGGACGCACUUUGAUGUCGCACGAAGGGAAAAGGGCCUGCGAAAUUUCCACAGCAAUGAAAAGCUGUGCUGGCGACAUGGCACUUUUCACAUAGAAUUUGUGGAUAUCAUCAAGGC ........((.((((((((((.((((((.(((((((.(((((((.......((((((........))))))....)).)).))).)))))).)......)))))))))))))..))))) ( -37.20) >DroEre_CAF1 31837 117 + 1 CGCAGGCCACACUUUGAUGUCGCACGAAGGGAGAGGG-CCUGCGAAAAUUCCACAGAUGUGAAAAGCUGG-GUGGCUACAUGGCACUUUUCACAUAGAAUUUGUGGAUAUCAUUAGGGC ((((((((...(((((........)))))......))-)))))).....(((((((((((((((((.((.-(((....)))..))))))))))).....))))))))............ ( -41.30) >DroYak_CAF1 29575 119 + 1 CGCAGGCCACACUUUGAUGUCGCACGAAGGGCAAGGGACCUGCGAAAUUUCCACAGAUGUGAAAAGCUGUGCUGGCGACAUGGUGCUUUUCACAUAGAAUUUGGGGAUAUCAUUAGGGC .(((((((...(((((........)))))......)).)))))((.((..(((.(.(((((((((((.....((....))....)))))))))))....).)))..)).))........ ( -39.40) >consensus CGCAGGCCACACUUUGAUGUCGCACGAAGGGAAAAGGACCUGCGAAAUUUCCACAGAAAUGAAAAGCUGUGCUGGCGACAUGGCACUUUUCACAUAGAAUUUGUGGAUAUCAUUAGGGC ((((((((...(((((........)))))......)).)))))).....(((((((((((((((((.(((..((....))..)))))))))))).....))))))))............ (-29.25 = -31.38 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:42 2006