Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,072,504 – 11,072,601 |
Length | 97 |
Max. P | 0.868602 |
Location | 11,072,504 – 11,072,601 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 90.91 |
Mean single sequence MFE | -24.63 |
Consensus MFE | -21.29 |
Energy contribution | -21.30 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.18 |
Mean z-score | -2.41 |
Structure conservation index | 0.86 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868602 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11072504 97 + 22224390 AUUUCUAGAGAAUAUUGGCUUCAUUGUCAGACUAACAUUGUUCGAUAUUUAGAUAGCUAUUCAU--UGAAUAAAGGCCUUAAUUUGUUCGAGGCAAAUC ..............(((((......))))).....(.(((((((((...(((....)))...))--))))))).)((((..(.....)..))))..... ( -17.90) >DroSec_CAF1 24446 99 + 1 AUUUCUAAGGAAUAUUGGCUUCAUUGUCGAACUAACAUUGUUCGAUAUUUAGAUAGUCAUUCAUCUCGAAUUAAGGCCUUAAUUUGUUCGAGGGGAAUC ((((((...(((...(((((((..((((((((.......))))))))....)).))))))))..(((((((.((........)).))))))))))))). ( -24.50) >DroSim_CAF1 26103 99 + 1 AUUCCUAAUGAAUAUUGGCUUCAUUGUCGAACUAACAUUGUUCGAUAUUUAGAUAGCCAUUCAUCUCGAAUUAAGGCCUUAAUUUGUUCGAGGGGAAUC ((((((.(((((...(((((((..((((((((.......))))))))....)).))))))))))(((((((.((........)).))))))))))))). ( -31.50) >consensus AUUUCUAAAGAAUAUUGGCUUCAUUGUCGAACUAACAUUGUUCGAUAUUUAGAUAGCCAUUCAUCUCGAAUUAAGGCCUUAAUUUGUUCGAGGGGAAUC ((((((...(((...(((((((..((((((((.......))))))))....)).))))))))..(((((((.((........)).))))))))))))). (-21.29 = -21.30 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:41 2006