Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,068,946 – 11,069,053 |
Length | 107 |
Max. P | 0.740122 |
Location | 11,068,946 – 11,069,053 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 90.29 |
Mean single sequence MFE | -19.53 |
Consensus MFE | -18.17 |
Energy contribution | -18.17 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.66 |
Structure conservation index | 0.93 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740122 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11068946 107 - 22224390 AUACAAUAUGUAUAUUUUGUGCUUAAAUAAAUUAUAUAUGUGUGUUUCAGGGUGGAUCUCUGAACAAUCUAAAUCGGCAAUAACUAAAGUUACAACACAAGUUGAUU (((((.((((((((.(((((......))))).)))))))))))))(((((((.....)))))))................((((....))))((((....))))... ( -21.80) >DroSec_CAF1 21001 95 - 1 AUACAAUAUGUAUAUUUUGUGCUUAAAUAAAUUAUAUAUGUGUGUUUCAGGGCGGAUCUCUGAAAAAUCUAAAUCGGCAAUAACUAAAG------------UUUAUU .((((.((((((((.(((((......))))).))))))))))))((((((((.....))))))))........................------------...... ( -17.90) >DroSim_CAF1 22681 95 - 1 AUACAAUAUGUAUAUUUUGUGCUUAAAUAAAUUAUAUAUGUGUGUUUCAGGGUGGAUCUCUGAAAAAUCUAAAUCGGCAAUAACUAAAG------------UUUAUU .((((.((((((((.(((((......))))).))))))))))))((((((((.....))))))))........................------------...... ( -18.90) >consensus AUACAAUAUGUAUAUUUUGUGCUUAAAUAAAUUAUAUAUGUGUGUUUCAGGGUGGAUCUCUGAAAAAUCUAAAUCGGCAAUAACUAAAG____________UUUAUU (((((.((((((((.(((((......))))).)))))))))))))(((((((.....)))))))........................................... (-18.17 = -18.17 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:39 2006