Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,058,600 – 11,058,714 |
Length | 114 |
Max. P | 0.668566 |
Location | 11,058,600 – 11,058,714 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.92 |
Mean single sequence MFE | -27.76 |
Consensus MFE | -7.44 |
Energy contribution | -9.04 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.26 |
Mean z-score | -1.78 |
Structure conservation index | 0.27 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668566 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11058600 114 - 22224390 ACAAUUUCCAGUUAGCAA-----GGCAAUGAAGGCCAUUGGAGUUUCGGGGGCCAAAAUUUAUCAACAGAAAUUCCACAAUCCCUGAAAAUGCGACAU-GUGCUAACUGCUCUGAAAUAA ...((((((((((((((.-----(((.......))).(((.(.(((((((((....(((((........)))))......))))))))).).)))...-.)))))))))....))))).. ( -30.40) >DroSec_CAF1 11313 102 - 1 ACAAUUUCCAGUUAGCAG-----GCCAAUGAAGGCCAUUG-AGUUUCGAGCGCCAA-AUUUAUCAACAGGAAUUCCACA----------AUGCGACAU-GUGCCAACUGGUCUGGAAUAA .....((((((((((..(-----((..(((..(((..(((-.....)))..)))..-...........((....))...----------......)))-..)))..)))).))))))... ( -24.70) >DroSim_CAF1 11038 102 - 1 ACAAUUUCCAGUUAGCAG-----GGCAAUGAAGGCCAUUG-AGUUUCGAGAGCCAA-AUUUAUCAACAGGAAUUCCACA----------AUGCGACAU-GUGCCAACUGGUCUGGAACAA .....((((((((((...-----(((((((..(((..(((-.....)))..)))..-...........((....))...----------......)))-.))))..)))).))))))... ( -27.00) >DroEre_CAF1 12831 99 - 1 ACAAUUUCCAGUGGGCAG-----CGCAAUGGAGCCCAUUG-CGUUUUAAGCGCCAA-AUUUAUCAACAGGAAUUCCACAAUCGCCGAAAAUGUGGCA--------------AUGCGAUAA ...........(((((((-----((((((((...))))))-))))....)).))).-..(((((....((....))......((((......)))).--------------....))))) ( -26.90) >DroYak_CAF1 11163 118 - 1 ACAAUUUCCAGUUAGCAAUCCAUGGCAAUGCAGGCCAUCG-AGUUUUAAGAGCCAA-AUUUAUCAACAGGAUUUUCACAACCACUGCAAAUGUGGCAUGGUGCUAACUGCUUUGCGAUAA .(((....(((((((((..(((((.((.(((((......(-(((((........))-)))).......((..........)).)))))....)).))))))))))))))..)))...... ( -29.80) >consensus ACAAUUUCCAGUUAGCAG_____GGCAAUGAAGGCCAUUG_AGUUUCGAGAGCCAA_AUUUAUCAACAGGAAUUCCACAA_C_C_G_AAAUGCGACAU_GUGCCAACUGCUCUGCAAUAA ........(((((.(((.......(((.....(((..(((......)))..)))..............((....))..............))).......))).)))))........... ( -7.44 = -9.04 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:32 2006