Locus 422

Sequence ID X_DroMel_CAF1
Location 1,226,413 – 1,226,506
Length 93
Max. P 0.515982
window649

overview

Window 9

Location 1,226,413 – 1,226,506
Length 93
Sequences 5
Columns 93
Reading direction reverse
Mean pairwise identity 81.03
Mean single sequence MFE -31.80
Consensus MFE -22.02
Energy contribution -22.06
Covariance contribution 0.04
Combinations/Pair 1.10
Mean z-score -1.52
Structure conservation index 0.69
SVM decision value -0.03
SVM RNA-class probability 0.515982
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1226413 93 - 22224390
ACUCCUCGUGCCCCUGGUGGUAGUCGUGGAUCUUCAGAGCUCCACUAACGGCCAGAAGGGCCAGGCAGGUAAUCUGCAGGAAUGGGUAAUAUA
..((((.(.(((((((((.((....(((((.((....)).)))))..)).)))))..)))))..((((.....))))))))............ ( -32.50)
>DroSec_CAF1 2 75 - 1
ACUCCUCGUGCCCUUGGUGGUAGUCGUGGAUCUUCAGAGCUCCACUCAAGGCCAGAAGGGCCAGGCAGGGAAUCU------------------
..((((..((((.(((((((.(((..(((....)))..))))))).)))((((.....)))).))))))))....------------------ ( -27.70)
>DroSim_CAF1 3460 93 - 1
ACUCCUCGUGCCCUUGGUGGUAGUCGUGGAUCUUCAGAGCUCCACUCAAGGCAAGAAGGGCCAGGCAGGGAAUCUGCAGGAAUAGGUAAUGUA
.(((.((.((((.(((((((.(((..(((....)))..))))))).))))))).)).)))((..((((.....)))).))............. ( -28.00)
>DroEre_CAF1 2 74 - 1
ACUCCUCGUGGCCCUGGUGGUAGUCGUGGAUCUUCAAAGCUCCACUCACGGCUAGAAGGGCCAGGCAGGGAAUC-------------------
..(((((.(((((((..((((.((.(((((.((....)).)))))..)).))))..))))))).).))))....------------------- ( -33.10)
>DroYak_CAF1 3209 93 - 1
ACUCCUCGUGGCCCUGGUGGUAGUCGUGGAUCUUCAGCGCUCCACUCACGGCCAGCAGUGCCAGGCAGGGAAUCUGCAGGAGUAAGUAAUGCG
((((((..((((.(((.((((.((.(((((.(......).)))))..)).)))).))).)))).((((.....)))))))))).......... ( -37.70)
>consensus
ACUCCUCGUGCCCCUGGUGGUAGUCGUGGAUCUUCAGAGCUCCACUCACGGCCAGAAGGGCCAGGCAGGGAAUCUGCAGGA_U__GUAAU___
...((((.((.((((..((((....(((((.(......).))))).....))))..)))).)).).)))........................ (-22.02 = -22.06 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:12 2006