Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,052,279 – 11,052,382 |
Length | 103 |
Max. P | 0.777387 |
Location | 11,052,279 – 11,052,382 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 79.79 |
Mean single sequence MFE | -27.61 |
Consensus MFE | -20.96 |
Energy contribution | -21.02 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.14 |
Mean z-score | -1.71 |
Structure conservation index | 0.76 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.777387 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11052279 103 - 22224390 UAAAUCAGGCGAACUUUCGGCUUAGCCGAGUUUAUCGCAGCUCAGUUAGCAUAAGUACGAAUCAGUGAGAUUUGACUAGAUUUUUUUUUUUU---UUUU------------GUGGCCA .......(((((((..(((((...)))))))))..(((((((.....)))...(((.((((((.....)))))))))...............---...)------------)))))). ( -24.60) >DroSec_CAF1 4474 103 - 1 UAAAUCAGGCGAACUUUCGGCUUAGUCGAGUUUAUCGCAGCUCAGUUAGCAUAAGUUCGAAUCAGUUCGAUUUGGCUAGAUUUCUGUUUUUU---UUUU------------UUGGCCA .(((((....((((((...(((.((..(((((......)))))..)))))..))))))(((....))))))))(((((((............---...)------------)))))). ( -26.16) >DroSim_CAF1 3271 106 - 1 UAAAUCAGGCGAACUUUCGGCUUAGUCGAGUUUAUCGCAGCUCAGUUAGCAUAAGUUCGAAUCAGUUCGAUUUGGCUAGAUUUCUGUUUUUUUUUUUUU------------UUGGCCA .(((((....((((((...(((.((..(((((......)))))..)))))..))))))(((....))))))))(((((((..................)------------)))))). ( -25.97) >DroEre_CAF1 6727 104 - 1 UAAAUCAGGCGAACUUUCGGCUUAGCCGAGUUUAUCGCAGCUCAGUUGGCAUAAGCUCGAUUCAG----------UUCGAUUUGGCUCAAUU----UUUGUGGCCAUGACGUAGGCCA ....(((((((((((.((((((((((((((((......)))))....))).))))).)))...))----------)))).))))).......----....(((((........))))) ( -33.70) >consensus UAAAUCAGGCGAACUUUCGGCUUAGCCGAGUUUAUCGCAGCUCAGUUAGCAUAAGUUCGAAUCAGUUCGAUUUGGCUAGAUUUCUGUUUUUU___UUUU____________UUGGCCA .......(((((((((...(((.(((.(((((......))))).))))))..))))))((((((((........))).)))))...............................))). (-20.96 = -21.02 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:27 2006