Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,051,899 – 11,052,016 |
Length | 117 |
Max. P | 0.897030 |
Location | 11,051,899 – 11,052,016 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 81.55 |
Mean single sequence MFE | -27.94 |
Consensus MFE | -18.46 |
Energy contribution | -18.70 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.28 |
Mean z-score | -1.90 |
Structure conservation index | 0.66 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.753218 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11051899 117 + 22224390 UUUUCUGUGCCUG-UCCCCACUCUGGGUUUUCCAAUUUUCCUUUGUGCGUCGAGCACCACAGAUUCUUGCUUAUGAUUGAGCCCAGGGCCAGGCAAAAAAAAAAAAAAAAACAGAAAA .((((((((((((-.(((...((((((....))...........((((.....))))..)))).....(((((....)))))...))).)))))................))))))). ( -32.79) >DroSec_CAF1 4105 106 + 1 UUUUCUGUGCCUG-UUCCCACUCUGAGUUUUCCAAUUUUCCUUUGUGCGUCGAGCACCACAGAUUCUUGCUUAUGAUUGAGCCCAGGGCCAGGCCAAAAAA-----------AGAAAA ((((.((.(((((-..(((..((((((((....)))).......((((.....))))..)))).....(((((....)))))...))).))))))).))))-----------...... ( -25.90) >DroSim_CAF1 2902 106 + 1 UUUUCUGUGCCUG-UUCCCACUCUGAGUUUUCCAAUUUUCCUUUGUGCGUCGAGCACCACAGAUUCUUGCUUAUGAUUGAGCCCAGGGCCAGGCCAAAAAA-----------AGAAAA ((((.((.(((((-..(((..((((((((....)))).......((((.....))))..)))).....(((((....)))))...))).))))))).))))-----------...... ( -25.90) >DroEre_CAF1 6390 97 + 1 UUUUCUGGCUCUGUCCCCAACUCUG--UGUUCCAAUUUUCCUUUUGGCGUUGAGCACCACAGAUUCUUGCUUAUGAUUCAGCACAGGGCCAGGCCAAAA------------------- ...(((((((((((.......((((--((...(((........)))((.....))..)))))).....(((........))))))))))))))......------------------- ( -28.80) >DroYak_CAF1 4621 98 + 1 UUUUCUGGGCUUG-CCCCGACUCCG--UUUUCCCAUUUCCCUUUGUGCGUUCAGCACCACAGAUUUUUGCUUAUGAUUGAGCUGAGGGCCAGGCCAAAAAC----------------- .......((((((-.(((.......--.................((((.....))))...........(((((....)))))...))).))))))......----------------- ( -26.30) >consensus UUUUCUGUGCCUG_UCCCCACUCUG_GUUUUCCAAUUUUCCUUUGUGCGUCGAGCACCACAGAUUCUUGCUUAUGAUUGAGCCCAGGGCCAGGCCAAAAAA___________AGAAAA .......((((((.(((...........................((((.....))))...........(((((....)))))...))).))))))....................... (-18.46 = -18.70 + 0.24)
Location | 11,051,899 – 11,052,016 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 81.55 |
Mean single sequence MFE | -32.55 |
Consensus MFE | -18.83 |
Energy contribution | -20.87 |
Covariance contribution | 2.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.40 |
Structure conservation index | 0.58 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897030 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11051899 117 - 22224390 UUUUCUGUUUUUUUUUUUUUUUUUGCCUGGCCCUGGGCUCAAUCAUAAGCAAGAAUCUGUGGUGCUCGACGCACAAAGGAAAAUUGGAAAACCCAGAGUGGGGA-CAGGCACAGAAAA .(((((((................(((((.((((..((((...............(((...((((.....))))...)))....(((.....))))))))))).-)))))))))))). ( -34.79) >DroSec_CAF1 4105 106 - 1 UUUUCU-----------UUUUUUGGCCUGGCCCUGGGCUCAAUCAUAAGCAAGAAUCUGUGGUGCUCGACGCACAAAGGAAAAUUGGAAAACUCAGAGUGGGAA-CAGGCACAGAAAA ......-----------((((((((((((..(((..((((.........(((...(((...((((.....))))...)))...)))((....)).)))))))..-))))).))))))) ( -32.20) >DroSim_CAF1 2902 106 - 1 UUUUCU-----------UUUUUUGGCCUGGCCCUGGGCUCAAUCAUAAGCAAGAAUCUGUGGUGCUCGACGCACAAAGGAAAAUUGGAAAACUCAGAGUGGGAA-CAGGCACAGAAAA ......-----------((((((((((((..(((..((((.........(((...(((...((((.....))))...)))...)))((....)).)))))))..-))))).))))))) ( -32.20) >DroEre_CAF1 6390 97 - 1 -------------------UUUUGGCCUGGCCCUGUGCUGAAUCAUAAGCAAGAAUCUGUGGUGCUCAACGCCAAAAGGAAAAUUGGAACA--CAGAGUUGGGGACAGAGCCAGAAAA -------------------((((((((((.((((.((((........))))....((((((((.....)).((((........))))..))--))))...)))).))).))))))).. ( -34.30) >DroYak_CAF1 4621 98 - 1 -----------------GUUUUUGGCCUGGCCCUCAGCUCAAUCAUAAGCAAAAAUCUGUGGUGCUGAACGCACAAAGGGAAAUGGGAAAA--CGGAGUCGGGG-CAAGCCCAGAAAA -----------------.(((((((.((.(((((..((((...............(((...((((.....))))..)))............--..)))).))))-).)).))))))). ( -29.25) >consensus UUUUCU___________UUUUUUGGCCUGGCCCUGGGCUCAAUCAUAAGCAAGAAUCUGUGGUGCUCGACGCACAAAGGAAAAUUGGAAAAC_CAGAGUGGGGA_CAGGCACAGAAAA ..................(((((((((((.(((...((((.........(((...(((...((((.....))))...)))...))).........)))))))...))))).)))))). (-18.83 = -20.87 + 2.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:26 2006