Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,050,702 – 11,050,804 |
Length | 102 |
Max. P | 0.796261 |
Location | 11,050,702 – 11,050,804 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.46 |
Mean single sequence MFE | -39.93 |
Consensus MFE | -21.94 |
Energy contribution | -22.82 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.20 |
Mean z-score | -1.95 |
Structure conservation index | 0.55 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796261 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11050702 102 + 22224390 ---------AAACAGUUGG-GAACC-----GGGGUCAGGGGUCGUUUCGGUUUCGUGAUUUC-GCCUGCAGGGUAACAUUUAAUCGAACCCUGGAGGCAGGACAUUCCCGCC--AACUUG ---------.....(.(((-(((((-----(..(((((((..((...))..))).))))..)-((((.((((((.............)))))).)))).))...)))))).)--...... ( -38.02) >DroSec_CAF1 2947 102 + 1 ---------AAACAGUUGG-GAAGC-----GGGGUCAGGGGUCGUUGCGGUACCGUGAUUUC-GCCUGCAGGGUAACAUUUAAUCGAACCCUGGAGGCAGCACAUUCCCGCC--UACUUG ---------....((.(((-(((((-----(..((((((..(((...)))..)).))))..)-((((.((((((.............)))))).)))).))...)))))).)--)..... ( -40.02) >DroEre_CAF1 5266 110 + 1 AACU-GGACAAACAGUUGG-GAACC-----GGGGUCAGGGGUCGUUUCGGUUCCGUGAUUCC-GCCUGCAGGGUAGCAUUUAAUCGAACCCUGGAGGCAGCACAUUCCCGCC--AACUUG ((((-(......)))))((-(((..-----(((((((((..(((...)))..)).)))))))-((((.((((((.............)))))).))))......)))))...--...... ( -46.42) >DroYak_CAF1 3340 109 + 1 --------CAAACAGUUGG-GCACUGUUGUGGGGUCAGGGGUCAUUUUGGGUGCGUGAUUCCUGCCUGCAGGGUAACAUUUAAUCGAACCCUGGAGGCAGGACAUUCCCGGC--AACUUG --------......(((((-(....((..((.(.((((((....)))))).).))..))((((((((.((((((.............)))))).))))))))....))))))--...... ( -42.42) >DroAna_CAF1 29405 111 + 1 GACACUCAUAAACAGGUAAAGACCU-----GAGGUCAGGGGUCUUUUCGACUGCCCGCAU-A-UCCUGCAGGGUAAUCCUUAAUCGAACCCUGGAGGCAGGACAUCGCCCCCGUAAAU-- (((.((((......(((....))))-----)))))).(((((........(((((((((.-.-...)))(((((.............))))).).)))))......))))).......-- ( -32.76) >consensus _________AAACAGUUGG_GAACC_____GGGGUCAGGGGUCGUUUCGGUUCCGUGAUUCC_GCCUGCAGGGUAACAUUUAAUCGAACCCUGGAGGCAGGACAUUCCCGCC__AACUUG ..............................((((...((((((.....)))))).........((((.((((((.............)))))).)))).......))))........... (-21.94 = -22.82 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:24 2006