Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,049,869 – 11,049,973 |
Length | 104 |
Max. P | 0.934155 |
Location | 11,049,869 – 11,049,973 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 77.20 |
Mean single sequence MFE | -24.55 |
Consensus MFE | -18.06 |
Energy contribution | -19.12 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.17 |
Mean z-score | -1.89 |
Structure conservation index | 0.74 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.934155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11049869 104 - 22224390 AGCGCUAUUUAUUUACAUAC------AGAUACGUAUUGUUUGCACAGGGAAAACUCUUUGGGCGAACUAAUGAAAUGGAAAUAG------UUGGGCAUUAGAAUAGUGCGGAUCGA .(((((((((......((((------......)))).((((((.((((((....)))))).))))))(((((.(((.......)------))...))))))))))))))....... ( -26.40) >DroSec_CAF1 2179 95 - 1 AGCGCUAUUUAUUUACAUAC------AGAUACGUAUUGUUUGCACAGGGAAAACUCUUUGAGCAAACUAAUGAAAUGGAAAUAG------UUGGUCAUUAGAAUAGU--------- ...(((((((..........------.....(((...((((((.((((((....)))))).))))))..))).(((((..(...------.)..))))).)))))))--------- ( -19.80) >DroEre_CAF1 4400 92 - 1 AGCGCUCUAUAUUUACAUAUACUCGUAGAUACGUAUUGUUUGCACAGAGAAAACUCUUUGAGCGAGCUAAUGAAAUGGAAAU----------------------AGUGUGCAUC-- .((((.((((((((((........)))))).(((...((((((.((((((....)))))).))))))..)))........))----------------------)).))))...-- ( -27.00) >DroYak_CAF1 2431 110 - 1 AGCGCUAUUUAUUUACAUAC------AGAUACGUAUUGUUUGCACAGGGAAAACUCUUUGAGCGAACUAAUCAAAUGGAAAUGGUUAUGGUUGAACAUUAGACUAGUGCGGAUCGA .((((..(((((((..((((------......)))).((((((.((((((....)))))).)))))).....)))))))..((((((((......)))..)))))))))....... ( -25.00) >consensus AGCGCUAUUUAUUUACAUAC______AGAUACGUAUUGUUUGCACAGGGAAAACUCUUUGAGCGAACUAAUGAAAUGGAAAUAG______UUGG_CAUUAGAAUAGUGCGGAUC__ .(((((((((...........................((((((.((((((....)))))).)))))).......((....))..................)))))))))....... (-18.06 = -19.12 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:23 2006