Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,047,619 – 11,047,715 |
Length | 96 |
Max. P | 0.991340 |
Location | 11,047,619 – 11,047,715 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.37 |
Mean single sequence MFE | -34.12 |
Consensus MFE | -24.91 |
Energy contribution | -24.80 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.32 |
Mean z-score | -2.12 |
Structure conservation index | 0.73 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991340 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11047619 96 + 22224390 CUUCUGGGACGGUCAACCAGUCACUUCCCCGGUAUAUCCCCGGAUGGGGGAUAUGUGGAACCCCAAUACCGCCGGCUACCAGAAUUACCAACAC------------------------CC .(((((((((((....)).)))......(((((((((((((.....)))))))).(((....))).....)))))...))))))..........------------------------.. ( -34.80) >DroSec_CAF1 23 96 + 1 CUUCUGGGACGGUCAACCAGUCACUUCCCCGGUGUAUCCCCAGAUGGGGGAUGCGUGGAAUCCCAAUACCUCCGGCUACCAGAAUUUCCAUCAC------------------------CC .(((((((((((....)).)))......((((.((((((((.....)))))))).(((....)))......))))...))))))..........------------------------.. ( -34.70) >DroSim_CAF1 21 96 + 1 AUUCUGGGACGGUCAACCAGUCACUUCCCCGGUGUAUCCCCAGAUGGGGGAUGCGUGGAAUCCCAAUACCUCCGGCUACCAGAAUUACCAUCAC------------------------CC ((((((((((((....)).)))......((((.((((((((.....)))))))).(((....)))......))))...))))))).........------------------------.. ( -35.20) >DroEre_CAF1 2500 96 + 1 CUUCUGGGACGGUCAGCCAGUCACCUCGCCGGUAUAUCCCCAGAUGGGGGAUAUGUGGAGUCCCAAUUCCUGUGGCUACCAGCGCUACCAUCAC------------------------UC ....(((((((((.((........)).)))..(((((((((.....)))))))))....))))))......(((((.......)))))......------------------------.. ( -32.20) >DroYak_CAF1 21 120 + 1 AUUCUGGGACGGUCAGCCAGUCACCUCGCCGGUGUAUCCCCAGAUGGGGGAUGUGUGGAAUCUCAAUACCUCCGGCUACCAGCGUUACAAUCAUCCUCAGUCCCAUACCCAUACCCAUAC ....(((((((((.((((...((((.....))))(((((((.....)))))))...(((...........))))))))))...(.......).......))))))............... ( -35.10) >DroAna_CAF1 15344 86 + 1 AUUCUGGAAUGGCCAGCCGGUGACCUCGCCCGUCUUCCCGCAAAUGGGUGACCUGUUGAGCCCGAACUCGUCGGGCUUCCAGUGGC---------------------------------- ...(((((.....((((.((((....)))).(((..((((....)))).)))..))))(((((((.....))))))))))))....---------------------------------- ( -32.70) >consensus AUUCUGGGACGGUCAACCAGUCACCUCCCCGGUGUAUCCCCAGAUGGGGGAUGUGUGGAAUCCCAAUACCUCCGGCUACCAGAAUUACCAUCAC________________________CC ...(((((((((....)).)))......(((((((((((((.....)))))))))(((....)))......))))...))))...................................... (-24.91 = -24.80 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:21 2006