Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,039,407 – 11,039,509 |
Length | 102 |
Max. P | 0.804461 |
Location | 11,039,407 – 11,039,509 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 69.97 |
Mean single sequence MFE | -34.90 |
Consensus MFE | -19.45 |
Energy contribution | -18.79 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.25 |
Mean z-score | -1.67 |
Structure conservation index | 0.56 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.804461 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11039407 102 - 22224390 ACCCACCCAG--AAAACGCCAGC-CCGCCAUUUUUCAGCACAGUGGAGUGGGUCAGAACACUCCUGGGAAUGGCGUGUCCUUCGGGCA---------------ACAAAUUGUUGCCUCAU .........(--((.((((((.(-((((.........)).....((((((........)))))).)))..))))))....)))(((((---------------((.....)))))))... ( -36.40) >DroSec_CAF1 26718 105 - 1 UCCCACCCAGGGAAAAAGUCAAC-CCGCCAUUUUUCGGCACAGUGGAAUGGGUCAGGACACUCCUGGGAAUGGCGUGUCCUUCGGGCU--------------CAUUUUUUCUUGCCCCAU ((((.....))))..........-............((((.((.(((((((((((((((((.((.......)).)))))))...))))--------------))))))..)))))).... ( -35.80) >DroYak_CAF1 21847 118 - 1 UCCCGCCCAG--AAUAUGCCAACCCCGCCAUUUGCCAGCACAGUGGGUUGGGUCACUACACUCCUGGGGAUGGCGAAUCCUGCGACCCUGCAAGUUCGCCCCUUUUUUUUGUUUCUCUAA .....(((((--......(((((((.((....((....))..)))))))))((....))....)))))...(((((((..((((....)))).))))))).................... ( -32.50) >consensus UCCCACCCAG__AAAAAGCCAAC_CCGCCAUUUUUCAGCACAGUGGAAUGGGUCAGAACACUCCUGGGAAUGGCGUGUCCUUCGGGCA_______________AUUUUUUGUUGCCCCAU .........................((((((((.((((...((((.............)))).))))))))))))........((((..........................))))... (-19.45 = -18.79 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:20 2006