Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,025,741 – 11,025,844 |
Length | 103 |
Max. P | 0.750276 |
Location | 11,025,741 – 11,025,844 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.29 |
Mean single sequence MFE | -41.00 |
Consensus MFE | -33.94 |
Energy contribution | -34.34 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.51 |
Structure conservation index | 0.83 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750276 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11025741 103 + 22224390 GAUCCUGCCACCAUUU-CCCGCUUUUAAUGACGCAGUGGCAAACACUCGGAAGGCGUCGACCCACUUGGCACAA-AGGGGGCGUGGUGAGUGGUGA---------------UAUGUAUGG ...((((((((((((.-.((((......((((((((((.....))))(....))))))).(((.(((......)-)))))..))))..))))))).---------------...))).)) ( -38.80) >DroSec_CAF1 18258 103 + 1 GAUCCUGCCACCAUUU-CCCGCUUUUAAUGACGCAGUGGCAAACACUCGGAAGGCGUCGACCCACUUGGCACAA-AGGGGGCGUGGUGAGUGCUGA---------------UAUGUAUGG ........((((((.(-(((.((((...((((((((((.....))))(....)))))))..((....))...))-)))))).)))))).((((...---------------...)))).. ( -33.40) >DroSim_CAF1 10041 103 + 1 GAUCCUGCCACCAUUU-CCCGCUUUUAAUGACGCAGUGGCAAACACUCGGAAGGCGUCGACCCACUUGGCACAA-AGGGGGCGUGGUGAGUGCUGA---------------UAUGUAUGG ........((((((.(-(((.((((...((((((((((.....))))(....)))))))..((....))...))-)))))).)))))).((((...---------------...)))).. ( -33.40) >DroEre_CAF1 12745 111 + 1 GAUCCUGCCACCAUUU-CCCGCUUUUAAUGACGCAGUGGCAAACACUCGGAAGGCGUCGACCCACUUGGCACAA-AGGGGGCGUGGUGAGUGGUGG-------GCCUUCCACAUGUAUGG .......((((((((.-.((((......((((((((((.....))))(....))))))).(((.(((......)-)))))..))))..))))))))-------.....(((......))) ( -42.20) >DroYak_CAF1 14178 120 + 1 GAUCCUGCCACCAUUUGCCCGCUUUUAAUGACGCAGUGGCAAACACUCGGAAGGCGUCGACCCACUUGGCACAAAAGGGGGCGUGGUGAGUGGUGGCUCGCACGCGUUCCAUAUGUGUGU ......(((((((((..(((((......((((((((((.....))))(....))))))).(((.(((.......))))))))).))..)))))))))..((((((((.....)))))))) ( -57.20) >consensus GAUCCUGCCACCAUUU_CCCGCUUUUAAUGACGCAGUGGCAAACACUCGGAAGGCGUCGACCCACUUGGCACAA_AGGGGGCGUGGUGAGUGGUGA_______________UAUGUAUGG ........((((((((.(((((......((((((((((.....))))(....))))))).(((..(((...)))...)))))).)).))))))))......................... (-33.94 = -34.34 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:05 2006