Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,022,545 – 11,022,663 |
Length | 118 |
Max. P | 0.661571 |
Location | 11,022,545 – 11,022,663 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.08 |
Mean single sequence MFE | -34.80 |
Consensus MFE | -29.24 |
Energy contribution | -29.20 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.19 |
Mean z-score | -1.37 |
Structure conservation index | 0.84 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661571 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11022545 118 + 22224390 CCACCCACGAAAAACUCGGACCUGCCUCGCUGCCGAUUGCCAAAUGAAUUUUGUCAGGCAGCGAAGGUUGAAAUUGGCUUUUGCCUU--UUGGCGAACGUAUUUUGAAUUUUAAUGCGGC ....((((((.....)))(((((...((((((((...((.((((.....)))).))))))))))))))).....)))..((((((..--..))))))((((((.........)))))).. ( -36.00) >DroSec_CAF1 15070 118 + 1 CCACCCACGAAAAACUCGGACCUGCCUCGCUGCCGAUUGCCAAAUGAAUUUUGUCAGGCAGCGAAGGUUGAAAUUGGCUUUUGCCUU--UUGGCGAACGUAUUUUGAAUUUUAAUGCGGC ....((((((.....)))(((((...((((((((...((.((((.....)))).))))))))))))))).....)))..((((((..--..))))))((((((.........)))))).. ( -36.00) >DroEre_CAF1 9118 118 + 1 CCACCCACGGAAAACUCGGACCUGCCUCGCUGUCGAUUGCCAAAUGAAUUUUGUCAGGCAGCGAAGGUUGAAAUUGGCUUUUGCCUU--UUGGCGAACGUAUUUUGAAUUUUAAUGCGGC ....((((((.....)))(((((...((((((((...((.((((.....)))).))))))))))))))).....)))..((((((..--..))))))((((((.........)))))).. ( -32.40) >DroYak_CAF1 10673 118 + 1 CCACCCACGAAAAACUCGGACCUGCCUCGCUGUCGAUUGCCAAAUGAAUUUUGUCAGGCAGCGAAGGUUGAAAUUGGCUUUUGCCUU--UUGGCGAACGUAUUUUGAAUUUUAAUGCGGC ....((((((.....)))(((((...((((((((...((.((((.....)))).))))))))))))))).....)))..((((((..--..))))))((((((.........)))))).. ( -33.30) >DroMoj_CAF1 12778 111 + 1 UCAUCGACGA--------GGUCUUCCUCGUU-UCGAUUGCCAAGUGAAUUUUGCCAGCCAGCGAAGGCUGAAAUUGGCUUUUGCCUUUUUUGGCGAACGUAUUUUGAAUUUUAAUGGGGA ..((((((((--------((....)))))..-)))))..(((...((((((.(((((.((((....))))...))))).((((((......))))))........))))))...)))... ( -36.30) >consensus CCACCCACGAAAAACUCGGACCUGCCUCGCUGUCGAUUGCCAAAUGAAUUUUGUCAGGCAGCGAAGGUUGAAAUUGGCUUUUGCCUU__UUGGCGAACGUAUUUUGAAUUUUAAUGCGGC (((....(((.....)))(((((...((((((((...((.((((.....)))).))))))))))))))).....)))..((((((......))))))((((((.........)))))).. (-29.24 = -29.20 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:04 2006