Locus 4202

Sequence ID X_DroMel_CAF1
Location 11,019,757 – 11,019,861
Length 104
Max. P 0.785062
window6907

overview

Window 7

Location 11,019,757 – 11,019,861
Length 104
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.02
Mean single sequence MFE -23.46
Consensus MFE -4.58
Energy contribution -4.62
Covariance contribution 0.04
Combinations/Pair 1.18
Mean z-score -1.75
Structure conservation index 0.20
SVM decision value 0.57
SVM RNA-class probability 0.785062
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11019757 104 - 22224390
CUGUUUCUGC--GUUCCU-GCAGUAAAUUU----UCGCUCUUACUUUUUUUUCGCCUGCACA---------UCGUUAAAGAUGUGAAACCGCCUGCUAAAGCUCACUCAAGUGAAAAAUU
......((((--(....)-))))....(((----(((((..............((...((((---------((......)))))).....))..((....)).......))))))))... ( -21.10)
>DroSec_CAF1 12367 96 - 1
CUG----------UUCCU-GCAGUAAAUUU----UCGCUUUCGCUUUUUUUUCGCCUGCACA---------UCGUUAAAGAUGUGAAACCGCCUGCUAAAGCUCACUCAAGUGAAAAAUU
(((----------(....-))))....(((----((((((..(((((.....((....((((---------((......))))))....))......)))))......)))))))))... ( -22.20)
>DroEre_CAF1 6255 94 - 1
CUGUUCCUGC--GUGCCU-GCAGUAAAUUU----GCGCUUUUACUU--UUUUCCCCUGCACA---------UCGUUAAAGAUGUGAGU--------CGAAGCUCACUCAAGUGAAAAAUU
......((((--(....)-)))).......----..(((((.(((.--..........((((---------((......)))))))))--------.)))))((((....))))...... ( -20.80)
>DroYak_CAF1 7600 112 - 1
CUGUUCCUGC--GUUCCU-GCAGUAAAUUUU---UUGCACUUACUU--UUUUCGCCGGCACAUCGUUCACAUCGUUAAAGAUGUGAAACCGCCUGCUUAAGCUCACUCAAGUGAAAAAUU
........((--((...(-((((........---)))))...))..--.....((.(((......((((((((......))))))))...))).))....))((((....))))...... ( -27.50)
>DroAna_CAF1 7608 104 - 1
CUCCUUCCCCCUGCUCCUGGCCGUAGAAUUUUUUUCGCUCUGGC-------CCCCGUUCGCA---------UCGUUAAAGAUGUGAAACCGCCUGCUAAAGCUCACUCAAGUGAAAAAUU
..........((((........))))....(((((((((..(((-------.....((((((---------((......))))))))...))).((....)).......))))))))).. ( -25.70)
>consensus
CUGUUCCUGC__GUUCCU_GCAGUAAAUUU____UCGCUCUUACUU__UUUUCGCCUGCACA_________UCGUUAAAGAUGUGAAACCGCCUGCUAAAGCUCACUCAAGUGAAAAAUU
...................(((((((..............))))).............((((.........((......))))))...............))((((....))))...... ( -4.58 =  -4.62 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:03 2006