Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,018,443 – 11,018,557 |
Length | 114 |
Max. P | 0.869842 |
Location | 11,018,443 – 11,018,557 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 86.09 |
Mean single sequence MFE | -25.99 |
Consensus MFE | -23.46 |
Energy contribution | -23.74 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.09 |
Mean z-score | -1.69 |
Structure conservation index | 0.90 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.869842 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11018443 114 - 22224390 UCAACCGUUCGGAAUCGGUGCCUGGGCAUUUGUGUUAUCGGUAAUUAUUUUGCCACUUUUUCAAGUGCUCUCACCACUUUCACCCGCCCGCCCGCCACUUGCCCUGCAACUAUC ......((((((....((((...(((((((((.......(((((.....))))).......))))))))).))))..........((......))........))).))).... ( -26.24) >DroSec_CAF1 11119 98 - 1 UCAACCGUUCGGAAUCGGUGCCUGGGCAUUUGUGUUAUCGGUAAUUAUUUUGCCACUUUUUCAAGUGCUUUCACCACUUUCGCCCGC----------------CUGCAACUAUC .((..((..(((((..((((...(((((((((.......(((((.....))))).......))))))))).))))..)))))..)).----------------.))........ ( -26.34) >DroEre_CAF1 5060 105 - 1 UCAACCGUUCGGAAUCGGUGCCUGGGCAUUUGUGUUAUCGGUAAUUAUUUUGCCACUUUUUCAAGUGCUCUCACCACUUUCGCC---------ACCACUUGCCCUGCAACUAUG .........(((((..((((...(((((((((.......(((((.....))))).......))))))))).))))..)))))..---------.....((((...))))..... ( -26.04) >DroYak_CAF1 6357 105 - 1 UCAACCGUUCGGAAUCGGUGCCUGGGCAUUUGUGUUAUCGGUAAUUAUUUUGCCACUUUUUCAAGUGCUCUCACCACUUUCGCC---------ACCACUUGCCCUGCAACUAUA .........(((((..((((...(((((((((.......(((((.....))))).......))))))))).))))..)))))..---------.....((((...))))..... ( -26.04) >DroAna_CAF1 5846 102 - 1 UCUACUGUUCGGAAUCGGUGCCUGGGCAGCUGUGUUAUCGGUAAUUAUUUUGCCACUUUUUCAAGUGCUCUCGCCACUUUCGG------------CACUUGCCCCACAAUAACG ....((((((((.........)))))))).((((.....(((((.....))))).......((((((((............))------------))))))...))))...... ( -25.30) >consensus UCAACCGUUCGGAAUCGGUGCCUGGGCAUUUGUGUUAUCGGUAAUUAUUUUGCCACUUUUUCAAGUGCUCUCACCACUUUCGCC__________CCACUUGCCCUGCAACUAUC .........(((((..((((...(((((((((.......(((((.....))))).......))))))))).))))..)))))................................ (-23.46 = -23.74 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:02 2006