Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,213,096 – 1,213,216 |
Length | 120 |
Max. P | 0.779924 |
Location | 1,213,096 – 1,213,216 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.94 |
Mean single sequence MFE | -37.92 |
Consensus MFE | -24.83 |
Energy contribution | -27.82 |
Covariance contribution | 3.00 |
Combinations/Pair | 1.10 |
Mean z-score | -1.77 |
Structure conservation index | 0.65 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779924 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1213096 120 - 22224390 CUGCUGCUGCAGCUGGAUCUUACGCUUCAGACUCUUUACCAGGGCGUUCUGCUCCAGCUGCUGCUUACUCCUCUUGGGGGCUACCUGCUCAUCCCCAUCCGCAUCGCCGUUUGCAGCGCC ..(((((.(((((((((.(..((((((..(........)..))))))...).)))))))))(((.....((....))((((.....))))..........))).........)))))... ( -42.10) >DroVir_CAF1 3823 96 - 1 UUGC----GCUGCUGAAUCUUCAUCUUGAGACUCUUAACCAGCGCGUUCUGCUCCAGCUGCUGCUUGGAUCGCUUCUUUGCCGGCUGCUCAACCUCAACC-------------------- ..((----((((..((.((((......)))).)).....)))))).........((((((..((..(((.....)))..)))))))).............-------------------- ( -25.30) >DroSim_CAF1 288 120 - 1 CUGCUGCUGCAUCUGGAUCUUACGCUUCAGACUCUUGACCAGGGCGUUCUGCUCCAGCUGCUGCUUACUCCGCUUGGGGGCUACCUGUUCAUCCCCAUCCGCAUCGCCGUUGGCAGCGCC ..(((((((((.(((((.(..(((((((((....))))....)))))...).))))).)))..........((.((((((...........))))))...)).........))))))... ( -38.60) >DroYak_CAF1 287 120 - 1 CUGCUGUUGCAGCUGGAUCUUGCGCUUCAGGCUCUUGACCAGGGCGUUCUGCUCCAGCUGCUGUUUACUCCGCUUGGGGGCUACCUGCUCAUCCCCAUCCGCAUCUCCGUUGGCAGCGCC ..(((((((((((((((.(..((((((..(((....).)).))))))...).)))))))))..........((.(((((((.....))....)))))...)).........))))))... ( -45.70) >consensus CUGCUGCUGCAGCUGGAUCUUACGCUUCAGACUCUUGACCAGGGCGUUCUGCUCCAGCUGCUGCUUACUCCGCUUGGGGGCUACCUGCUCAUCCCCAUCCGCAUCGCCGUUGGCAGCGCC ..(((((.(((((((((.(..((((((..(........)..))))))...).))))))))).............(((((((.....))....)))))...............)))))... (-24.83 = -27.82 + 3.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:10 2006