Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,016,923 – 11,017,021 |
Length | 98 |
Max. P | 0.997794 |
Location | 11,016,923 – 11,017,021 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 81.78 |
Mean single sequence MFE | -24.78 |
Consensus MFE | -19.48 |
Energy contribution | -20.12 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.14 |
Mean z-score | -3.15 |
Structure conservation index | 0.79 |
SVM decision value | 2.93 |
SVM RNA-class probability | 0.997794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11016923 98 + 22224390 UUAUUA--CUUUAUAGUUCUAGUUGACAAUAAGGAAUUAAAUGUUUCAACAUUGCGUAUGCUUAAUAUUCAAUGCUGAUAUUGCGUAUACGCAACGUUGG ......--((((((.(((......))).))))))............((((.((((((((((.((((((.((....)))))))).)))))))))).)))). ( -26.90) >DroSec_CAF1 9666 98 + 1 UUAUCA--CUUUCUAAUACUGAUUCACAAUCAGAAAUGAAAUGUUUCAACACUGCGUAUGCUUAAUAUUCAAUGCAGAUAUUGCGUAUACGCAACGUUGA .....(--(((((.....(((((.....)))))....)))).)).(((((..(((((((((.(((((((.......))))))).)))))))))..))))) ( -25.80) >DroSim_CAF1 5369 98 + 1 UUAUCA--CUUUCCAAUACUGAUUGACAAUCAGAAAUUGAAUGUUUCAACACUGCGUAUGCUUCAUAUUCAAUGCAGAUAUUGCGUAUACGCAACGUUGA ......--.....((((.(((((.....)))))..))))......(((((..(((((((((..((...((......))...)).)))))))))..))))) ( -22.20) >DroEre_CAF1 3532 99 + 1 GUAUAAGCCUUCAUUGUUCUGGUUGAUA-AAAUGAAUUCAAUGUUCCAGCAUUGCGUAUACUUAAUAUUCGAUGUUGAUAUUGCGUAUACGCAACGUUUA ......(..((((((..((.....))..-.))))))..)........(((.((((((((((.(((((((.......))))))).)))))))))).))).. ( -23.10) >DroYak_CAF1 4847 98 + 1 UUAUCA--CUCUAUUGUUCUGGUUGAGAAAAAUGAAUUAAAGGUUUCAACAUUGCGUAUACUUAAUAUUCAAUAUUGAUAUUGCGUAUACGCAAUGUUAG ......--(((.(((.....))).)))......(((........)))((((((((((((((.(((((((.......))))))).)))))))))))))).. ( -25.90) >consensus UUAUCA__CUUUAUAGUUCUGGUUGACAAUAAGGAAUUAAAUGUUUCAACAUUGCGUAUGCUUAAUAUUCAAUGCUGAUAUUGCGUAUACGCAACGUUGA .............................................(((((.((((((((((.(((((((.......))))))).)))))))))).))))) (-19.48 = -20.12 + 0.64)
Location | 11,016,923 – 11,017,021 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 81.78 |
Mean single sequence MFE | -24.20 |
Consensus MFE | -16.34 |
Energy contribution | -16.42 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.15 |
Mean z-score | -3.45 |
Structure conservation index | 0.68 |
SVM decision value | 2.88 |
SVM RNA-class probability | 0.997536 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11016923 98 - 22224390 CCAACGUUGCGUAUACGCAAUAUCAGCAUUGAAUAUUAAGCAUACGCAAUGUUGAAACAUUUAAUUCCUUAUUGUCAACUAGAACUAUAAAG--UAAUAA .(((((((((((((.(..((((((......).)))))..).)))))))))))))..............((((..((.....))...))))..--...... ( -20.20) >DroSec_CAF1 9666 98 - 1 UCAACGUUGCGUAUACGCAAUAUCUGCAUUGAAUAUUAAGCAUACGCAGUGUUGAAACAUUUCAUUUCUGAUUGUGAAUCAGUAUUAGAAAG--UGAUAA ((((((((((((((.(..((((((......).)))))..).))))))))))))))......(((((((((((...........))))).)))--)))... ( -24.60) >DroSim_CAF1 5369 98 - 1 UCAACGUUGCGUAUACGCAAUAUCUGCAUUGAAUAUGAAGCAUACGCAGUGUUGAAACAUUCAAUUUCUGAUUGUCAAUCAGUAUUGGAAAG--UGAUAA ((((((((((((((.(...(((((......).))))...).))))))))))))))....((((((..(((((.....))))).))))))...--...... ( -26.10) >DroEre_CAF1 3532 99 - 1 UAAACGUUGCGUAUACGCAAUAUCAACAUCGAAUAUUAAGUAUACGCAAUGCUGGAACAUUGAAUUCAUUU-UAUCAACCAGAACAAUGAAGGCUUAUAC ....((((((((((((..((((((......).)))))..))))))))))))((((.....((((.....))-))....)))).................. ( -23.30) >DroYak_CAF1 4847 98 - 1 CUAACAUUGCGUAUACGCAAUAUCAAUAUUGAAUAUUAAGUAUACGCAAUGUUGAAACCUUUAAUUCAUUUUUCUCAACCAGAACAAUAGAG--UGAUAA .(((((((((((((((..(((((((....)).)))))..))))))))))))))).........(((((((.((((.....)))).))).)))--)..... ( -26.80) >consensus UCAACGUUGCGUAUACGCAAUAUCAGCAUUGAAUAUUAAGCAUACGCAAUGUUGAAACAUUUAAUUCCUUAUUGUCAACCAGAACUAUAAAG__UGAUAA .(((((((((((((.(..((((((......).)))))..).))))))))))))).............................................. (-16.34 = -16.42 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:00 2006