Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,013,627 – 11,013,732 |
Length | 105 |
Max. P | 0.777418 |
Location | 11,013,627 – 11,013,732 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.77 |
Mean single sequence MFE | -33.41 |
Consensus MFE | -20.24 |
Energy contribution | -20.02 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.25 |
Mean z-score | -1.43 |
Structure conservation index | 0.61 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.777418 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11013627 105 - 22224390 AGCGCUGGCCGAAGGAUAUCGCCAGGAGUUCUUCGGCCUGGGCACCCGCAUCAAGAUUACGGUUGGUU--CGCUUUCCAUUUUC-CACUUUC--UUCG-G---------AUUGAACAUUU .((.(.(((((((((((.((....)).))))))))))).).))..(((....((((....((.(((..--......)))....)-)....))--))))-)---------........... ( -33.10) >DroSec_CAF1 6482 105 - 1 CGCGCUGGCCGAAGGAUAUCGCCAGGAGUUCUUUGGUCUGGGCACCCGCAUCAAGAUAACGGUGGGUU--CCGUCUCCACUUUU-CACUUUC--UUCG-G---------AUUGAACAUUU .((.(.(((((((((((.((....)).))))))))))).).))((((((............)))))).--............((-((...((--....-)---------).))))..... ( -31.40) >DroSim_CAF1 1548 105 - 1 CGCGCUGGCCGAAGGAUAUCGCCAGGAGUUCUUUGGUCUGGGCACCCGCAUCAAGAUAACGGUGGGUU--CCGUCUCCACUUUU-CACUUUC--UUCG-G---------AUUGAACAUUU .((.(.(((((((((((.((....)).))))))))))).).))((((((............)))))).--............((-((...((--....-)---------).))))..... ( -31.40) >DroEre_CAF1 211 118 - 1 GGCCCUGGCCGAAGGAUAUCGCCAGGAGUUCUUCGGCCUGGGCACCCGCAUCAAGAUUACGGUGUGUUUUCCCCUGCCAUUUGCCCAUUGAA--AUUGGGUGAACUAUCAUUUAACAUUC .((((.(((((((((((.((....)).))))))))))).))))...((((((........)))))).............((..((((.....--..))))..))................ ( -44.40) >DroYak_CAF1 1495 101 - 1 GGCCCUGGCCGAAGGUUAUCGCCAAGAGUUCUUCGGUCUGGGCACCCGCAUCAAGAUCACGGUGAGCUUUCCC------UUUGUCCAUUGAA--AUCA-----------AAUUAAUAUAU .((((.(((((((((...((.....))..))))))))).))))...........(((..(((((..(......------...)..)))))..--))).-----------........... ( -31.70) >DroAna_CAF1 201 99 - 1 AGCUUUGGCCGAAGGAUACCGCCAGGAGUUCCUCGGUCUGGGCACCAAAAUCAAGAUUACAGUAAGUUUUUG--GGGAA----U-UAUUUUCUGUUAG-G-------------AAGAGCC .(((..((((((.((((.((....)).)))).))))))..))).((((((.................)))))--)((..----.-..((((((....)-)-------------)))).)) ( -28.43) >consensus AGCGCUGGCCGAAGGAUAUCGCCAGGAGUUCUUCGGUCUGGGCACCCGCAUCAAGAUUACGGUGGGUU__CCCUCUCCAUUUUU_CACUUUC__UUCG_G_________AUUGAACAUUU .((.(.(((((((((((.((....)).))))))))))).).))............................................................................. (-20.24 = -20.02 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:54 2006