| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,012,294 – 11,012,389 |
| Length | 95 |
| Max. P | 0.657414 |
| Location | 11,012,294 – 11,012,389 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 73.97 |
| Mean single sequence MFE | -24.46 |
| Consensus MFE | -9.96 |
| Energy contribution | -10.88 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657414 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11012294 95 + 22224390 CAUUUU-CUGCCAGCGAAAAGGCCGAGGAAAUUGUUUCAUUUAAUUAUUUAGUGCGGUCAUCUUUUGAUCGAAGUCAAUUGGAAUUU--GCAGCUGCA------- ......-..((.(((..(((..((((((((....))))................((((((.....)))))).......))))..)))--...))))).------- ( -19.30) >DroSec_CAF1 5173 97 + 1 CAUUUU-CAGCUGGCGAAAAGGCCGAGAAAAUCGUUUUAUUUAAUUAUUUGGUGCGGUCAUCUUUUGAUUGCAGUCAAUUGGAAUUUUCGCAGCUGCA------- ......-((((((.((((((..(((((.....)...............((((((((((((.....)))))))).))))))))..))))))))))))..------- ( -31.50) >DroSim_CAF1 247 97 + 1 CAUUUU-CAGCUGGCGAAAAGGCCGAGAAAAUCGUUUUAUUUAAUUAUUUGGUGCGGUCAUCUUUUGAUUGCAGUCAAUUGGAAUUUUCGCAGCUGCA------- ......-((((((.((((((..(((((.....)...............((((((((((((.....)))))))).))))))))..))))))))))))..------- ( -31.50) >DroYak_CAF1 228 95 + 1 UAUUUUGCAGCCAGCCA-AAGGCCGAGCAAAUCGUUUCAUUUAAUUAUUUGGUGCGGUCAUCUUUUGAUUGAAGUCAAUUGGAAUUU--GCAGCUGUC------- ......(((((..((..-..((((((.(((((.(((......))).))))).).)))))...(((..((((....))))..)))...--)).))))).------- ( -25.50) >DroPer_CAF1 4245 85 + 1 UUUCUU-AUAC---------------GGAAAUUAUA-CUUGUUCUUUUUUGGUGCGGUUAUCUUUGAAUUGAAAUCAAUUGAA-GCU--GCAGUUUCAUUGAGGG ..((((-(...---------------.((((((..(-((...........)))((((((.((.((((.......))))..)))-)))--))))))))..))))). ( -14.50) >consensus CAUUUU_CAGCCAGCGAAAAGGCCGAGAAAAUCGUUUCAUUUAAUUAUUUGGUGCGGUCAUCUUUUGAUUGAAGUCAAUUGGAAUUU__GCAGCUGCA_______ .......((((.........(((((...((((.(((......))).))))....)))))...(((..((((....))))..)))........))))......... ( -9.96 = -10.88 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:51 2006