Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,000,054 – 11,000,166 |
Length | 112 |
Max. P | 0.771568 |
Location | 11,000,054 – 11,000,166 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 96.43 |
Mean single sequence MFE | -28.85 |
Consensus MFE | -27.25 |
Energy contribution | -27.37 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.87 |
Structure conservation index | 0.94 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.771568 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11000054 112 - 22224390 CGGCUGCCAGGUGUCGGCUGCAUAUGAUUUAGCAGUCUAUUUAAAUAAUUUUACUGCAAGGCUGCGCACUUGUAUUAUUUUUGUUUAAUUCUCUAUGCAUUUGUCACCACGC .((.((.(((((((.((((((.((.....))))))))...((((((((...((.((((((((...)).)))))).))...))))))))........))))))).)))).... ( -29.00) >DroSim_CAF1 14426 112 - 1 CGGCUGCCAGGUGUCGGCUGCAUAUGAUUUAGCAGUCUAUUUAAAUAAUUUUACAGCAAGGCUGCGCACUUGUAUUAUUUUUGUUUAAUUCUCUAUGCAUUUGUCACCGCGC (((.((.(((((((.((((((.((.....))))))))...((((((((.......(((((((...)).))))).......))))))))........))))))).)))))... ( -27.64) >DroYak_CAF1 12461 112 - 1 CGGCUGCCAGGUGUCGGCUGCAUAUGAUUUAGCAGUCUAUUUAAAUAAUUUUACUGCAAGGCUGCACACUUGUAUUAUUUUUGUUUAAUUCCCUGUGCAUUUGUCACUGCGC .((((((((((....((((((.((.....))))))))...((((((((...((.((((((........)))))).))...))))))))...)))).)))...)))....... ( -29.90) >consensus CGGCUGCCAGGUGUCGGCUGCAUAUGAUUUAGCAGUCUAUUUAAAUAAUUUUACUGCAAGGCUGCGCACUUGUAUUAUUUUUGUUUAAUUCUCUAUGCAUUUGUCACCGCGC .((.((.(((((((.((((((.((.....))))))))...((((((((...((.((((((........)))))).))...))))))))........))))))).)))).... (-27.25 = -27.37 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:48 2006