Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,987,917 – 10,988,016 |
Length | 99 |
Max. P | 0.850983 |
Location | 10,987,917 – 10,988,016 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 78.54 |
Mean single sequence MFE | -35.08 |
Consensus MFE | -23.92 |
Energy contribution | -24.12 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.17 |
Mean z-score | -1.64 |
Structure conservation index | 0.68 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850983 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10987917 99 + 22224390 UCUCCUGGUGCUCCUGGGCAUCUGUGGAGCCGCUCGGGCGGAUCUUACCUACCGCGGAAAUGCAGUGCAUCCAGGU-----CAUUAAGAAAUGGAUACUGUAUU .((((.((((((....))))))...))))((((..((..((......))..)))))).((((((((..(((((..(-----(.....))..))))))))))))) ( -37.90) >DroSec_CAF1 21 99 + 1 UCUCCUGGUGCUCCUGGGCAUCUGCGGAGCCGCUCUGGCGGAUCUCACCUACCGCGGAAAUGCAGUGCAUCCAGGU-----CGUUAAGAAAUGAAUACUAUAUU ...((((((((..(((.(..(((((((.(((.....)))((......))..)))))))..).))).))).)))))(-----((((....))))).......... ( -34.50) >DroSim_CAF1 512 99 + 1 UCUCCUGGUGCUCCUGGGCAUCUGCGGAGCCGCUCGGGCGGAUCUCACCUACCGCGGAAAUGCAGUGCAUCCAGGU-----CGUUAAGAAAUGAAUACUAUAUU ...((((((((..(((.(..(((((((.(((.....)))((......))..)))))))..).))).))).)))))(-----((((....))))).......... ( -35.00) >DroEre_CAF1 21 104 + 1 UCUCCUGGUGCUCCUGGGCAUCUGCGGAGCCGCCCGGGCGGAUCUCACCUACCGCGGCAAUGCAGUGCAUCCAGGUGCAUCCACUAGGAAUUCGAUAAUAUAGC ..(((((((((.((((((((.(((((..(((((..((..((......))..)))))))..))))))))..))))).))....)))))))............... ( -44.80) >DroYak_CAF1 700 99 + 1 UCUCCUGCUGCUCCUGGGCAUCUGUGGAGCCGCCAGGGCGGAUCUCACCUACCGCGGCAAUGCAGUGCAUCCAGGU-----CACUAAGAAUUGGAUAUUAUACU ..(((..((...((((((((.(((((..(((((..((..((......))..)))))))..))))))))..))))).-----.....))....)))......... ( -33.10) >DroPer_CAF1 33 78 + 1 UUUGCUCCUGCUCCUAACCAUUUGUGGCGUGGCCUGGGGCGAUGUGACGUACCGCGGCAAUGCCGUGCAUCCAGGU-----UA--------------------- ...((....))...(((((....((.((((.(((...))).)))).))....((((((...))))))......)))-----))--------------------- ( -25.20) >consensus UCUCCUGGUGCUCCUGGGCAUCUGCGGAGCCGCCCGGGCGGAUCUCACCUACCGCGGAAAUGCAGUGCAUCCAGGU_____CAUUAAGAAAUGGAUACUAUAUU ...((((((((.(....((((((((((..((((....))))..........))))))..)))).).))).)))))............................. (-23.92 = -24.12 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:30 2006