Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,984,473 – 10,984,583 |
Length | 110 |
Max. P | 0.983917 |
Location | 10,984,473 – 10,984,583 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.22 |
Mean single sequence MFE | -33.74 |
Consensus MFE | -9.49 |
Energy contribution | -10.57 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.12 |
Mean z-score | -2.31 |
Structure conservation index | 0.28 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.983917 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10984473 110 + 22224390 AAUGCAAGACCCAG-------UUGCUCCUGU--GUCUGCGUUAGUGAAUGCAAUCAAUUACGAGUAUCUAAUGGCAACCGCCGUCGAGGAUUUGCAGAUACAA-AUGCAGAUGCAGAUAC ...((((.......-------))))..((((--(((((((((.(((..(((((((......))..((((.(((((....)))))...)))))))))..))).)-)))))))))))).... ( -35.40) >DroSec_CAF1 8569 98 + 1 AACGCAAGACCCAG-------UUGCUCCUGUGUGUCUGCGUUAGUGAAUGCGAUUAAUUACGAGUAUCU----------GCCGUCGAGGAGAUGCAGAUACAA-AUGCAGAUGCAG---- ...((((.......-------)))).....((((((((((((.((((.((....)).))))..((((((----------((.(((.....))))))))))).)-))))))))))).---- ( -32.80) >DroSim_CAF1 8694 98 + 1 AACACAAGACCCAG-------UUGCUCCUGUGUGUCUGCGUUAGUGAAUGCGAUUAAUUACGAGUAUCU----------GCCGUCGAGGAGAUGCAGAUACAA-AUGCAGAUGCAG---- ...........(((-------......)))((((((((((((.((((.((....)).))))..((((((----------((.(((.....))))))))))).)-))))))))))).---- ( -31.30) >DroEre_CAF1 9382 97 + 1 AACGCAAGACCAGG-------AUGCACCUGU--GUCUGCGUCA-UGCAUGCGAUUAAUUA------UCUUUUGGCAAUUG---ACGAGGCGGAGCAGAUCCGUCGAGGAGAUGCAG---- .(((((.(((((((-------.....)))).--))))))))..-(((((.((.((((((.------.(....)..)))))---))).((((((.....))))))......))))).---- ( -34.50) >DroYak_CAF1 9028 104 + 1 AACGUAAGACCAAGAUGCAAGAUGCACCAGU--GUCUGCGUCA-UGAGUGCGAUUAAUUA------UCUGAUGGCAAUUG---CCGAGGCGGAGCAGAUCCGUCGAGGAGAUGCAG---- ..((((....((.((((((.(((((....))--))))))))).-))..))))........------((((.((((....)---)))...))))(((..(((.....)))..)))..---- ( -34.70) >consensus AACGCAAGACCCAG_______UUGCUCCUGU__GUCUGCGUUAGUGAAUGCGAUUAAUUACGAGUAUCU__UGGCAA__GCCGUCGAGGAGAUGCAGAUACAA_AUGCAGAUGCAG____ ......................(((..((((..(((((((((................................................))))))))).......))))..)))..... ( -9.49 = -10.57 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:26 2006