Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,210,542 – 1,210,634 |
Length | 92 |
Max. P | 0.576380 |
Location | 1,210,542 – 1,210,634 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 90.12 |
Mean single sequence MFE | -32.43 |
Consensus MFE | -24.90 |
Energy contribution | -27.30 |
Covariance contribution | 2.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.77 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576380 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1210542 92 + 22224390 AGUGCGAGCACAUCCACGCAGGCAGCCAGUGGAGAAUCCUCUGAAGAUCGCAGAUCCGAUGGAGGUGCUGCAGGCGCUGGAUUCGAGUCACU .(((....)))((((((((..((((((((.((.....)).)))...((((......))))......)))))..))).))))).......... ( -31.40) >DroSec_CAF1 2907 92 + 1 AGCACGAGCACAUCCACGCAGGCAGCCAGUGGAGAAUCCUCUGAAGAUCGCAGAUCCGCUGGAGGUGCUGCAGGCGCUGGAUUCGACUCACU .....((((..((((((((..((((((((((((......((((.......))))))))))).....)))))..))).)))))..).)))... ( -34.90) >DroSim_CAF1 3355 92 + 1 AGCACGAGCACAUCCACGCAGGCAGCCAGUGGAGAAUCCUCUGAAGAUCUCAGAUCCGCUGGAGGUGCUGCAGGCGCUGGAUUCGACUCACU .....((((..((((((((..((((((((((((......(((((.....)))))))))))).....)))))..))).)))))..).)))... ( -36.80) >DroEre_CAF1 2873 83 + 1 AGUACGAGCACAUCCACGCAGGCAGCCAGUGGAGAAUCCUCUAAAGAUCGCAGAUCCGCUGGA---------GGCGCUGGAUUGGACUCACU .....(((..((((((.((..((..((((((((......((....)).......)))))))).---------.)))))))).))..)))... ( -29.52) >DroYak_CAF1 2906 83 + 1 AGUGCGAGCACAUCCACGCAGGCAGCCAGUGGAGAAUCCUCUAAAGAUCGCAGAUCCGCUGGA---------GGCGCUGGAUUGGACUCACU .....(((..((((((.((..((..((((((((......((....)).......)))))))).---------.)))))))).))..)))... ( -29.52) >consensus AGUACGAGCACAUCCACGCAGGCAGCCAGUGGAGAAUCCUCUGAAGAUCGCAGAUCCGCUGGAGGUGCUGCAGGCGCUGGAUUCGACUCACU .....((((..((((((((.((((.((((((((......((((.......))))))))))))...))))....))).)))))..).)))... (-24.90 = -27.30 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:07 2006