Locus 418

Sequence ID X_DroMel_CAF1
Location 1,210,542 – 1,210,634
Length 92
Max. P 0.576380
window643

overview

Window 3

Location 1,210,542 – 1,210,634
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 90.12
Mean single sequence MFE -32.43
Consensus MFE -24.90
Energy contribution -27.30
Covariance contribution 2.40
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.77
SVM decision value 0.09
SVM RNA-class probability 0.576380
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1210542 92 + 22224390
AGUGCGAGCACAUCCACGCAGGCAGCCAGUGGAGAAUCCUCUGAAGAUCGCAGAUCCGAUGGAGGUGCUGCAGGCGCUGGAUUCGAGUCACU
.(((....)))((((((((..((((((((.((.....)).)))...((((......))))......)))))..))).))))).......... ( -31.40)
>DroSec_CAF1 2907 92 + 1
AGCACGAGCACAUCCACGCAGGCAGCCAGUGGAGAAUCCUCUGAAGAUCGCAGAUCCGCUGGAGGUGCUGCAGGCGCUGGAUUCGACUCACU
.....((((..((((((((..((((((((((((......((((.......))))))))))).....)))))..))).)))))..).)))... ( -34.90)
>DroSim_CAF1 3355 92 + 1
AGCACGAGCACAUCCACGCAGGCAGCCAGUGGAGAAUCCUCUGAAGAUCUCAGAUCCGCUGGAGGUGCUGCAGGCGCUGGAUUCGACUCACU
.....((((..((((((((..((((((((((((......(((((.....)))))))))))).....)))))..))).)))))..).)))... ( -36.80)
>DroEre_CAF1 2873 83 + 1
AGUACGAGCACAUCCACGCAGGCAGCCAGUGGAGAAUCCUCUAAAGAUCGCAGAUCCGCUGGA---------GGCGCUGGAUUGGACUCACU
.....(((..((((((.((..((..((((((((......((....)).......)))))))).---------.)))))))).))..)))... ( -29.52)
>DroYak_CAF1 2906 83 + 1
AGUGCGAGCACAUCCACGCAGGCAGCCAGUGGAGAAUCCUCUAAAGAUCGCAGAUCCGCUGGA---------GGCGCUGGAUUGGACUCACU
.....(((..((((((.((..((..((((((((......((....)).......)))))))).---------.)))))))).))..)))... ( -29.52)
>consensus
AGUACGAGCACAUCCACGCAGGCAGCCAGUGGAGAAUCCUCUGAAGAUCGCAGAUCCGCUGGAGGUGCUGCAGGCGCUGGAUUCGACUCACU
.....((((..((((((((.((((.((((((((......((((.......))))))))))))...))))....))).)))))..).)))... (-24.90 = -27.30 +   2.40) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:07 2006