Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,983,051 – 10,983,186 |
Length | 135 |
Max. P | 0.999931 |
Location | 10,983,051 – 10,983,158 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 95.08 |
Mean single sequence MFE | -30.62 |
Consensus MFE | -24.32 |
Energy contribution | -24.28 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -3.04 |
Structure conservation index | 0.79 |
SVM decision value | 2.06 |
SVM RNA-class probability | 0.987033 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10983051 107 + 22224390 GACUUUUGUUGGUGG-GGGUGUAUUUGUUUGUGCGUUGAAGGGAAAGCGUAAUAACGCCUCCUGAUAUCGAUAUCGAUAUCAUAUCACAAAAAACAAUAAACCAAAAA ........(((((((-((((((...(((...((((((........)))))))))))))))))((((((((....))))))))..................)))))... ( -30.70) >DroSec_CAF1 6910 107 + 1 GACUUUUGUUGGUGG-GGGUGUAUUUGUUUGUGCGUUGAAGGGAAAGCGUAAUAACGCCUCCUGAUAUCGAUAUCGAUAUCAUAUCACAAAAAACAAUAAACCCCAAA .(((......))).(-((((.((((..((((((.......((((..((((....)))).))))(((((((....)))))))....))))))....)))).)))))... ( -33.50) >DroSim_CAF1 6957 107 + 1 GACUUUUGUUGGUGG-GGGUGUAUUUGUUUGUGCGUUGAAGGGAAAGCGUAAUAACGCCUCCUGAUAUCGAUAUCGAUAUCAUAUCACAAAAAACAAUAAACCCUAAA .(((......))).(-((((.((((..((((((.......((((..((((....)))).))))(((((((....)))))))....))))))....)))).)))))... ( -31.20) >DroEre_CAF1 7603 108 + 1 GACUUUUGUUGGUGGUGGGUGCAUUUGUUUGUGCGUAGAAAGGAAAGCGUAAUAACCCCUCCUGAUAUCGAUAUCGAUAUCACAUCACAAAAAACAAUAAACCAAAAA .....(((((.((((((.(..((......))..)......((((..(.((....)))..))))(((((((....))))))).))))))....)))))........... ( -27.10) >DroYak_CAF1 7250 107 + 1 GACUUUUGUUGGUGGUGGGUGCAUUUGUUUGUACGUAGAAAGGAAAGCGUAAUAACGCCUCCUGAUAUCGAUAUCGAUAUCAUAUCACAAAAAACAAUAAACCAAAA- .....(((((.((((((.(((((......)))))......((((..((((....)))).))))(((((((....))))))).))))))....)))))..........- ( -30.60) >consensus GACUUUUGUUGGUGG_GGGUGUAUUUGUUUGUGCGUUGAAGGGAAAGCGUAAUAACGCCUCCUGAUAUCGAUAUCGAUAUCAUAUCACAAAAAACAAUAAACCAAAAA .(((......)))....(((....((((((....((.((.((((..((((....)))).))))(((((((....)))))))...))))...))))))...)))..... (-24.32 = -24.28 + -0.04)
Location | 10,983,051 – 10,983,158 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 95.08 |
Mean single sequence MFE | -30.40 |
Consensus MFE | -27.62 |
Energy contribution | -27.42 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -4.07 |
Structure conservation index | 0.91 |
SVM decision value | 4.63 |
SVM RNA-class probability | 0.999931 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10983051 107 - 22224390 UUUUUGGUUUAUUGUUUUUUGUGAUAUGAUAUCGAUAUCGAUAUCAGGAGGCGUUAUUACGCUUUCCCUUCAACGCACAAACAAAUACACCC-CCACCAACAAAAGUC .....(((.((((((((..((((...((((((((....))))))))((((((((....)))))))).......)))).)))).)))).))).-............... ( -29.10) >DroSec_CAF1 6910 107 - 1 UUUGGGGUUUAUUGUUUUUUGUGAUAUGAUAUCGAUAUCGAUAUCAGGAGGCGUUAUUACGCUUUCCCUUCAACGCACAAACAAAUACACCC-CCACCAACAAAAGUC ...(((((.((((((((..((((...((((((((....))))))))((((((((....)))))))).......)))).)))).)))).))))-).............. ( -35.70) >DroSim_CAF1 6957 107 - 1 UUUAGGGUUUAUUGUUUUUUGUGAUAUGAUAUCGAUAUCGAUAUCAGGAGGCGUUAUUACGCUUUCCCUUCAACGCACAAACAAAUACACCC-CCACCAACAAAAGUC ....((((.((((((((..((((...((((((((....))))))))((((((((....)))))))).......)))).)))).)))).))))-............... ( -32.60) >DroEre_CAF1 7603 108 - 1 UUUUUGGUUUAUUGUUUUUUGUGAUGUGAUAUCGAUAUCGAUAUCAGGAGGGGUUAUUACGCUUUCCUUUCUACGCACAAACAAAUGCACCCACCACCAACAAAAGUC .....(((.((((....((((((.((((((((((....)))))))(((((((((....)).)))))))....)))))))))..)))).)))................. ( -27.30) >DroYak_CAF1 7250 107 - 1 -UUUUGGUUUAUUGUUUUUUGUGAUAUGAUAUCGAUAUCGAUAUCAGGAGGCGUUAUUACGCUUUCCUUUCUACGUACAAACAAAUGCACCCACCACCAACAAAAGUC -..(((((....(((..(((((....((((((((....))))))))((((((((....))))))))..............))))).)))......)))))........ ( -27.30) >consensus UUUUUGGUUUAUUGUUUUUUGUGAUAUGAUAUCGAUAUCGAUAUCAGGAGGCGUUAUUACGCUUUCCCUUCAACGCACAAACAAAUACACCC_CCACCAACAAAAGUC .....(((.((((....((((((...((((((((....))))))))((((((((....)))))))).........))))))..)))).)))................. (-27.62 = -27.42 + -0.20)
Location | 10,983,079 – 10,983,186 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 93.36 |
Mean single sequence MFE | -22.86 |
Consensus MFE | -19.50 |
Energy contribution | -20.06 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -3.07 |
Structure conservation index | 0.85 |
SVM decision value | 3.71 |
SVM RNA-class probability | 0.999547 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10983079 107 + 22224390 UGUGCGUUGAAGGGAAAGCGUAAUAACGCCUCCUGAUAUCGAUAUCGAUAUCAUAUCACAAAAAACAAUAAACCAAAAAAGAAACGCUAAAAACUAGUAGUUUUGUG (((...(((..((((..((((....)))).))))(((((((....)))))))......)))...))).............(((((((((.....)))).)))))... ( -24.60) >DroSec_CAF1 6938 107 + 1 UGUGCGUUGAAGGGAAAGCGUAAUAACGCCUCCUGAUAUCGAUAUCGAUAUCAUAUCACAAAAAACAAUAAACCCCAAAAGAAACGCUAAAAACUAGUAGUUUUGUG ...(((((...(((...((((....))))....((((((((....))))))))....................)))......)))))..(((((.....)))))... ( -24.90) >DroSim_CAF1 6985 107 + 1 UGUGCGUUGAAGGGAAAGCGUAAUAACGCCUCCUGAUAUCGAUAUCGAUAUCAUAUCACAAAAAACAAUAAACCCUAAAAGAAACGCUAAAAACUAGUAGUUUUGUG ...(((((..((((...((((....))))....((((((((....))))))))...................))))......)))))..(((((.....)))))... ( -26.10) >DroEre_CAF1 7632 106 + 1 UGUGCGUAGAAAGGAAAGCGUAAUAACCCCUCCUGAUAUCGAUAUCGAUAUCACAUCACAAAAAACAAUAAACCAAAAAAAAAACGCUACAAACUAUUAU-UUUGUC (((((((....((((..(.((....)))..))))(((((((....)))))))...............................)))).))).........-...... ( -18.80) >DroYak_CAF1 7279 105 + 1 UGUACGUAGAAAGGAAAGCGUAAUAACGCCUCCUGAUAUCGAUAUCGAUAUCAUAUCACAAAAAACAAUAAACCAAAA-AGAAACGCUAAAAACUAUUAG-UUUGUC .....((.((.((((..((((....)))).))))(((((((....)))))))...))))...................-.((...(((((......))))-)...)) ( -19.90) >consensus UGUGCGUUGAAGGGAAAGCGUAAUAACGCCUCCUGAUAUCGAUAUCGAUAUCAUAUCACAAAAAACAAUAAACCAAAAAAGAAACGCUAAAAACUAGUAGUUUUGUG ...(((((...((((..((((....)))).))))(((((((....)))))))..............................))))).................... (-19.50 = -20.06 + 0.56)
Location | 10,983,079 – 10,983,186 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 93.36 |
Mean single sequence MFE | -26.25 |
Consensus MFE | -23.20 |
Energy contribution | -23.48 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.08 |
Mean z-score | -2.60 |
Structure conservation index | 0.88 |
SVM decision value | 3.76 |
SVM RNA-class probability | 0.999589 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10983079 107 - 22224390 CACAAAACUACUAGUUUUUAGCGUUUCUUUUUUGGUUUAUUGUUUUUUGUGAUAUGAUAUCGAUAUCGAUAUCAGGAGGCGUUAUUACGCUUUCCCUUCAACGCACA ...(((((.....)))))..(((((............(((..(.....)..)))((((((((....))))))))((((((((....)))))))).....)))))... ( -26.60) >DroSec_CAF1 6938 107 - 1 CACAAAACUACUAGUUUUUAGCGUUUCUUUUGGGGUUUAUUGUUUUUUGUGAUAUGAUAUCGAUAUCGAUAUCAGGAGGCGUUAUUACGCUUUCCCUUCAACGCACA ...(((((.....)))))..(((((......(((...(((..(.....)..)))((((((((....))))))))((((((((....)))))))))))..)))))... ( -28.70) >DroSim_CAF1 6985 107 - 1 CACAAAACUACUAGUUUUUAGCGUUUCUUUUAGGGUUUAUUGUUUUUUGUGAUAUGAUAUCGAUAUCGAUAUCAGGAGGCGUUAUUACGCUUUCCCUUCAACGCACA ...(((((.....)))))..(((((......(((...(((..(.....)..)))((((((((....))))))))((((((((....)))))))))))..)))))... ( -28.70) >DroEre_CAF1 7632 106 - 1 GACAAA-AUAAUAGUUUGUAGCGUUUUUUUUUUGGUUUAUUGUUUUUUGUGAUGUGAUAUCGAUAUCGAUAUCAGGAGGGGUUAUUACGCUUUCCUUUCUACGCACA ...(((-(((((((......................)))))))))).((((.((((((((((....)))))))(((((((((....)).)))))))....))))))) ( -23.55) >DroYak_CAF1 7279 105 - 1 GACAAA-CUAAUAGUUUUUAGCGUUUCU-UUUUGGUUUAUUGUUUUUUGUGAUAUGAUAUCGAUAUCGAUAUCAGGAGGCGUUAUUACGCUUUCCUUUCUACGUACA .(((((-..((((((....(.((.....-...)).)..)))))).)))))....((((((((....))))))))((((((((....))))))))............. ( -23.70) >consensus CACAAAACUACUAGUUUUUAGCGUUUCUUUUUUGGUUUAUUGUUUUUUGUGAUAUGAUAUCGAUAUCGAUAUCAGGAGGCGUUAUUACGCUUUCCCUUCAACGCACA ....................(((((............(((..(.....)..)))((((((((....))))))))((((((((....)))))))).....)))))... (-23.20 = -23.48 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:22 2006