Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,961,381 – 10,961,485 |
Length | 104 |
Max. P | 0.529658 |
Location | 10,961,381 – 10,961,485 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 90.48 |
Mean single sequence MFE | -36.78 |
Consensus MFE | -27.36 |
Energy contribution | -27.48 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.15 |
Mean z-score | -1.60 |
Structure conservation index | 0.74 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529658 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10961381 104 + 22224390 UUGCAGCUGCAUUCUCUCCUGCUCCUGGACCCUCUGCAGCUCCCGC------ACCCGCUCCCUCUCCUGAUGGGCCAUCUGAGCGGGCACCAUGAGCACCGAGGCUCGCA ....(((((((.....(((.......))).....)))))))...((------.(((((((....(((....)))......)))))))......((((......)))))). ( -36.20) >DroSec_CAF1 6184 110 + 1 UUGCAGCUGCAUCCUCUCCUGCUCCUGGACCCUCUGCAGCUCCCGCUCGCGCUCCCGCUCCCUCUCCUGAUGGGCCAUCUGAGUGGGCACCAUGAGCACCGAGGCUCGCA .((((((((((.....(((.......))).....)))))))((((((((((....))).(((((....)).)))......)))))))......((((......))))))) ( -40.00) >DroSim_CAF1 6306 110 + 1 UUGCAGCUGGAUCCUCUCCUGCUCCUGGACCCUCUGCAGCUCCCGCUCGCGCUCCCGCUCCCUCUCCUGAUGGGCCAUCUGAGCGGGCACCAUGAGCACCGAGGCUCGCA .(((((..((.(((............))).)).)))))((.((((((((((....))).(((((....)).)))......)))))))......((((......)))))). ( -40.80) >DroEre_CAF1 6070 104 + 1 CUGCAGCUGCAUUCUCUCCUGCUCCUGGACCCUCUGCAGCUCCCGC------UCCCGUUCCCUGUCCUGAUGGGCCAUCUGAGCGGGCACCAUGAGAACCGAUGCUCUCA .((((((((((.....(((.......))).....))))))).((((------((..((..(((((....)))))..))..)))))))))...(((((........))))) ( -34.10) >DroYak_CAF1 6067 104 + 1 UUGCAGCUGUAUCCUCUCCUGCUCCUGAACCCUUUGCAGCUCCCGC------UCCCGUUCCCUUUCCUGAUGGGCCAUCUGAGCGGGCGCCAUGAGGACCGAGGCUCUCA ....((((...(((((...(((.............)))((.(((((------((.....(((.........)))......))))))).))...)))))....)))).... ( -32.82) >consensus UUGCAGCUGCAUCCUCUCCUGCUCCUGGACCCUCUGCAGCUCCCGC______UCCCGCUCCCUCUCCUGAUGGGCCAUCUGAGCGGGCACCAUGAGCACCGAGGCUCGCA .((((((((((.....(((.......))).....))))))).............((((((....(((....)))......)))))))))....((((......))))... (-27.36 = -27.48 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:12 2006