Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,936,476 – 10,936,577 |
Length | 101 |
Max. P | 0.593713 |
Location | 10,936,476 – 10,936,577 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 80.65 |
Mean single sequence MFE | -30.83 |
Consensus MFE | -26.12 |
Energy contribution | -24.90 |
Covariance contribution | -1.22 |
Combinations/Pair | 1.32 |
Mean z-score | -1.18 |
Structure conservation index | 0.85 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593713 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10936476 101 + 22224390 --CACUUCCUCUUCAUUUGCCUUUAAUCGCUUAGGCGACCAUUGCUUCGCUGGCGCUGGUCAUUGGUAGUGGAGCAGUUGCCCGCUCGAUUGAGUACCAGCCG --...................((((((((....((((((...((((((((((.((........)).))))))))))))))))....))))))))......... ( -29.90) >DroSec_CAF1 1858 101 + 1 --CACUUCCUCUUUAUUUGCCUUCAAUCGCUUAGGCGACCAUUGCUUCGCUGGCGCUGGUUAUCGGUAGCGGAGCAGUUGCCCGCUCCAUUGAGUACCAGCCG --..........................(((..(((((........))))))))((((((..((((((((((.((....)))))))..)))))..)))))).. ( -32.50) >DroSim_CAF1 2160 101 + 1 --CACUUCCUCUUCAUUUGCCUUCAAUCGCUUAGGCGACCAUUGCUUCGCUGGCGCUGGUUAUCGGUAGCGGAGCAGUUGCCCGCUCCAUUGAGUACCAGCCG --..........................(((..(((((........))))))))((((((..((((((((((.((....)))))))..)))))..)))))).. ( -32.50) >DroEre_CAF1 1775 100 + 1 --CACUACCU-UCCAUUUCCCUACAAUCGCUUAGGCGACCAUUGCUUCGCUGGCUCUGGUCAUCGGUAGCGGAGCAGUGGCCCGCUCCAUUGAGUACCAGCCG --........-......................(((..((((((((((((((.(..........).))))))))))))))...((((....))))....))). ( -32.10) >DroWil_CAF1 361 93 + 1 CACACUUUCAUUUU----------AUUCUGACAGUGGAGUAUUGCAUCGCUUGCGCUGGUCAUUGGCAGCGGUGCUGUCGCUCGUUCUAUUGAGUAUCAGCCU ..((((.(((....----------....))).)))).......(((.....)))((((((....((((((...))))))(((((......))))))))))).. ( -27.40) >DroYak_CAF1 2250 90 + 1 --CACUACCU-UCC----------AAUCGCUUAGGCGACCAUUGCUUCGCUGGCUCUGGUCAUUGGUAGCGGAGCCGUGGCCCGUUCUAUUGAGUACCAGCCG --........-...----------.........((((((((..(((.....)))..)))))..(((((((((.((....))))))((....)).)))))))). ( -30.60) >consensus __CACUUCCUCUUCAUUUGCCUUCAAUCGCUUAGGCGACCAUUGCUUCGCUGGCGCUGGUCAUCGGUAGCGGAGCAGUUGCCCGCUCCAUUGAGUACCAGCCG ..........................((((....)))).....(((.....)))((((((..((((((((((.((....)))))))..)))))..)))))).. (-26.12 = -24.90 + -1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:03 2006